/dynamo_readthedocs

deposit tutorials for dynamo readthedocs pages

Primary LanguagePythonBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

package package documentation

Dynamo: Mapping Vector Field of Single Cells

Inclusive model of expression dynamics with metabolic labeling based scRNA-seq / multiomics, vector field reconstruction, potential landscape mapping and differential geometry analyses.

Installation - Ten minutes to dynamo - Tutorials - API - Citation - Theory

Documentation of Dynamo and Related Tutorial Notebooks

  • introduction
  • zebrafish
  • differential geometry
  • scNT-seq
  • scEU
    • cell cycle
    • organoid

Discussion

Please use github issue tracker to report coding related issues of dynamo. For community discussion of novel usage cases, analysis tips and biological interpretations of dynamo, please join our public slack workspace: dynamo-discussion (Only a working email address is required from the slack side).

Contribution

If you want to contribute to the development of dynamo, please check out CONTRIBUTION instruction: Contribution