Pinned Repositories
AnnCell
annotate cell types
D2R_codes
dynamo-release
Inclusive model of expression dynamics with metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
hitl-single-cell
Human-in-the-loop Single-cell Analysis
scFly
scSnippet
My own code repository for single-cell analysis
SIP
SIP, a Single-cell Interchangeable Pipeline, still under construction
spateo-release
Spatiotemporal modeling of spatial transcriptomics
SSAT
List of Sectory protein, Surface protein, and Transcription Factors
yimiaozhiwang
疫苗之王
chansigit's Repositories
chansigit/scSnippet
My own code repository for single-cell analysis
chansigit/hitl-single-cell
Human-in-the-loop Single-cell Analysis
chansigit/AnnCell
annotate cell types
chansigit/DEPair
chansigit/dynamo-release
Inclusive model of expression dynamics with metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
chansigit/scinterchange
convert single-cell data objects
chansigit/spateo-release
Spatiotemporal modeling of spatial transcriptomics
chansigit/VeloFusion
VeloFusion coordinates multiple scRNA-seq velocity datasets
chansigit/harmony-pytorch
chansigit/irae_reproduction
chansigit/AlignmentFreeD2
Python implementation of D2 associated statistics evaluting sequence similarities
chansigit/awesome-genesets
chansigit/chansigit.github.io
chansigit/dna-pytorch-tutorial
a super basic tutorial on how to create a pytorch models for raw DNA sequences
chansigit/dynamo_readthedocs
deposit tutorials for dynamo readthedocs pages
chansigit/Growing-Neural-Cellular-Automata
A reproduction of growing neural cellular automata using PyTorch.
chansigit/heartmap-cci-reproduction
Reproducible codes for heartmap cci analysis
chansigit/ilcdev
chansigit/meni-atlas-web
chansigit/meniatlas_code
codes supporting single-cell profiling of human meniscal cells
chansigit/pretty-print-confusion-matrix
Confusion Matrix in Python: plot a pretty confusion matrix (like Matlab) in python using seaborn and matplotlib
chansigit/py3plex
Py3plex - A multilayer complex network visualization and analysis library in python3
chansigit/pytorch-hydra-template
基于pytorch和hydra的模板
chansigit/pytorch_geometric
Graph Neural Network Library for PyTorch
chansigit/sc-toolbox
A collection of project templates and useful functions for single-cell data analysis with Scanpy.
chansigit/scanpy_deg
enhanced DEG analysis in scanpy
chansigit/sceasy
A package to help convert different single-cell data formats to each other
chansigit/sijiechen.github.io
chansigit/task_vectors
Editing Models with Task Arithmetic
chansigit/VGAE-PyTorch
This repository shows an implementation of the VGAE based model with PyTorch.