sinanugur
Researcher at Department of Pathology, Institute of Clinical Medicine, University of Oslo
University of OsloOslo/Norway
Pinned Repositories
academic-kickstart
📝 Easily create a beautiful website using Academic, Hugo, and Netlify
bioconda-recipes
Conda recipes for the bioconda channel.
cellsnake
Cellsnake tool main repo
LCscripts
Lung Cancer scripts for XGBoost training/testing
MirMachine
MirMachine, a command line tool to detect microRNA homologs in genome sequences.
MirMachine-supplementary
RNAseq-variant-calling
scrna-workflow
scRNA workflow of Cellsnake
sncRNA-workflow
A small ncRNA workflow in Snakemake.
TaME-seq
TaME-seq Snakemake workflow
sinanugur's Repositories
sinanugur/cellsnake
Cellsnake tool main repo
sinanugur/scrna-workflow
scRNA workflow of Cellsnake
sinanugur/sncRNA-workflow
A small ncRNA workflow in Snakemake.
sinanugur/MirMachine
MirMachine, a command line tool to detect microRNA homologs in genome sequences.
sinanugur/MirMachine-supplementary
sinanugur/TaME-seq
TaME-seq Snakemake workflow
sinanugur/academic-kickstart
📝 Easily create a beautiful website using Academic, Hugo, and Netlify
sinanugur/bioconda-recipes
Conda recipes for the bioconda channel.
sinanugur/blog
sinanugur/environments
sinanugur/Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
sinanugur/janusrna-shiny
sinanugur/LCscripts
Lung Cancer scripts for XGBoost training/testing
sinanugur/RNAseq-variant-calling
sinanugur/DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
sinanugur/markdown-here
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
sinanugur/mg2sc
Analyzing metagenomics of single cell RNA-seq
sinanugur/MIRfix
The MIRfix pipeline
sinanugur/mkdocs
Project documentation with Markdown.
sinanugur/MultiKParallel
MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via a multi-resolution perspective.
sinanugur/myRNAtools
sinanugur/sinanugur
sinanugur/sinanugur.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
sinanugur/sinanugur.github.io-old
sinanugur/snakemake-course
sinanugur/spaceranger-workflow
sinanugur/spatial-transcriptomics
sinanugur/spatial-workflow
sinanugur/stop-predatory-journals.github.io
A listing of predatory academic journals and publishers.
sinanugur/uncle_psl
A BLAT (PSL) to SAM converter.