Snakemake course material

You can clone this repository or:

Download the course material from this link

"https://github.com/sinanugur/snakemake-course/raw/main/data-for-snakemake-novice-bioinformatics.tar.xz"

#download and extract data
wget "https://github.com/sinanugur/snakemake-course/raw/main/data-for-snakemake-novice-bioinformatics.tar.xz"
tar -xvf data-for-snakemake-novice-bioinformatics.tar.xz

If you have Miniconda or Anaconda installed, you can create the environment:

conda env create --file snakemake_lesson.yml --force