Pinned Repositories
ViraVate
RNAseq Reporting Designed for Clinical Deliverability
HASSL_Homogeneous_Analysis_of_SRA_rnaSequencing_Libraries
annotater
Annotate sequences by BLAST using NCBI taxonomy information
bam2circos
Visualize your BAM alignments with Circos
bkv
Sequences and annotation files for BKV
pickaxe
Pickaxe is a viral discovery tool to help identify potential infectious agents in NGS sequencing reads
sct2
Helper functions for analyzing single cell transcriptomics SCT data
single-cell-viewer
R package to visualize scRNA sequencing data.
Virus_Detection_SRA
pcantalupo's Repositories
pcantalupo/annotater
Annotate sequences by BLAST using NCBI taxonomy information
pcantalupo/pickaxe
Pickaxe is a viral discovery tool to help identify potential infectious agents in NGS sequencing reads
pcantalupo/bkv
Sequences and annotation files for BKV
pcantalupo/sct
legacy version of sct that only works with Seurat v2 objects
pcantalupo/sct2
Helper functions for analyzing single cell transcriptomics SCT data
pcantalupo/single-cell-viewer
R package to visualize scRNA sequencing data.
pcantalupo/chess
pcantalupo/covid_dashboard
pcantalupo/docker_dyi_mysql
pcantalupo/docker_tests
pcantalupo/dotfiles
.files, including ~/.osx — sensible hacker defaults for OS X
pcantalupo/examples
Code examples
pcantalupo/hela
pcantalupo/mytaxonomy
pcantalupo/nvutils
Sundry Utility Functions
pcantalupo/regexcite
Make Regular Expressions More Exciting
pcantalupo/rocker_rstudio_seurat2
Seurat2 installation in Rocker Rstudio
pcantalupo/sortedfreq
Display a descending frequency of values
pcantalupo/tcga
pcantalupo/tidytuesdayscreencasts
testing code based on TTS
pcantalupo/twitterR
searching for and displaying a table of tweets to obtain URLs
pcantalupo/ucdavis-scrnaseqworkshop
pcantalupo/ViraVate
RNAseq Reporting Designed for Clinical Deliverability
pcantalupo/Virus_Detection_SRA
pcantalupo/ViruSpy
A pipeline for viral identification from metagenomic samples
pcantalupo/Learning-Bitcoin-from-the-Command-Line
A complete course for learning Bitcoin programming and usage from the command
pcantalupo/nextflowtest
pcantalupo/nf-co.re
Code and files for the main nf-core website.
pcantalupo/Pverse
Meta package that installs my commonly used packages
pcantalupo/scoretable