BioPerl

Free and Open Source Perl tools for bioinformatics, genomics, and life science

Pinned Repositories

Bio-EUtilities
Low-level OO Perl interface for NCBI's eutils
Language:Perl4 34 126
Bio-FeatureIO
Sequence Feature streams
Language:Perl4 34 109
Bio-Tools-HMM
BioPerl tools for Hidden Markov Model analysis
Language:Perl8 36 02
bioperl-db
BioPerl BioSQL ORM
Language:Perl10 34 812
bioperl-dev
**DEPRECATED** This once held experimental (developer-only) BioPerl Code; we no longer support this repository and instead recommend setting up a separate repository for your focused project
Language:Perl5 36 12
bioperl-docker
Docker files for BioPerl
Language:Dockerfile6 9 76
bioperl-live
Core BioPerl 1.x code
Language:Perl312 51 217186
bioperl-run
BioPerl wrappers
Language:Perl36 33 4318
bioperl.github.io
The BioPerl Web site: http://bioperl.org
Language:CSS14 32 338
p5-bpwrapper
BioPerl scripts and utilities
Language:Perl11 31 44

BioPerl's Repositories

bioperl/bioperl-live
Core BioPerl 1.x code
Language:Perl312 51 217186
bioperl/bioperl-run
BioPerl wrappers
Language:Perl36 33 4318
bioperl/bioperl.github.io
The BioPerl Web site: http://bioperl.org
Language:CSS14 32 338
bioperl/p5-bpwrapper
BioPerl scripts and utilities
Language:Perl11 31 44
bioperl/Bio-EUtilities
Low-level OO Perl interface for NCBI's eutils
Language:Perl4 34 126
bioperl/Bio-FeatureIO
Sequence Feature streams
Language:Perl4 34 109
bioperl/Bio-Biblio
Bio-Biblio
Language:Perl3 37 03
bioperl/bioperl-pipeline
Analysis pipelines from wrappers
Language:Perl3 35 02
bioperl/Bio-SeqIO-interpro
XML-based InterPro parser
Language:Perl2 7 0
bioperl/Bio-DB-SeqFeature
Language:Perl1 7 31
bioperl/Bio-DB-SwissProt
Language:Perl1 6 4
bioperl/Bio-SearchIO-hmmer
BioPerl parser to HMMER output
Language:Perl1 7 0
bioperl/Bio-SearchIO-Writer-BSMLResultWriter
BioPerl BSML BLAST Result Writer
Language:Perl1
bioperl/Bio-Tools-Run-RemoteBlast
BioPerl interface to a remote BLAST server
Language:Perl1 7 11
bioperl/Bio-DB-NCBIHelper
BioPerl modules for accessing data from NCBI
Language:Perl0 7 83
bioperl/.github
Community default repo
7 0
bioperl/Bio-DB-BioFetch
Language:Perl7 3
bioperl/Bio-DB-EMBL
BioPerl modules for accessing data from EMBL-EBI
Language:Perl6 2
bioperl/Bio-DB-GFF
Language:Perl7 31
bioperl/Bio-DB-HIV
BioPerl interface to the Los Alamos HIV Sequence Database
Language:Perl6 1
bioperl/Bio-DB-RefSeq
Language:Perl6 5
bioperl/Bio-DB-Taxonomy-sqlite
Language:Perl7 0
bioperl/Bio-Procedural
Procedural interface to a subset of the BioPerl functionality
Language:Perl7 3
bioperl/Bio-Restriction
BioPerl distribution for restriction enzymes
Language:Perl7 41
bioperl/Bio-SeqIO-game
Language:Perl
bioperl/Bio-SeqIO-locuslink
Language:Perl
bioperl/Bio-SeqIO-seqxml
Language:Perl
bioperl/Bio-SeqIO-tinyseq
Language:Perl
bioperl/Bio-TreeIO-phyloxml
Language:Perl
bioperl/Bio-Variation
Language:Perl6 3