bioperl/bioperl-live

Issues

• New warnings with perl 5.41.x

  #394 opened 10 days ago by eserte
  0

• Could Bio::DB::Fasta support gzipped FASTA?

  #393 opened 2 months ago by Tong-Chen
  0

• Each line of the file must be less than 65,536 characters

  #345 opened 4 years ago by Juke34
  9

• Alternative CI?

  #392 opened 6 months ago by cjfields
  2

• Circular dependency

  #331 opened 5 years ago by euduca
  6

• Bio::Tools::GFF add extra empty attribute problematic

  #388 opened 7 months ago by Juke34
  1

• Travis-CI test issues

  #325 opened 6 months ago by cjfields
  3

• Bio::Tools::CodonTable is out of date (again)

  #391 opened 6 months ago by carandraug
  2

• Genetic code 15 need to be supported

  #389 opened 6 months ago by igortru
  5

• t/Root/RootIO.t may fail because of Google returning 403

  #385 opened 9 months ago by eserte
  4

• Build failure until I used cpanm --force, on Mac OS X Catalina

  #338 opened 5 years ago by afbent
  1

• cant run VAMPr because of Bio::DB::Fasta

  #384 opened a year ago by Hedi65
  1

• Minimum Perl version should be set to v5.8

  #375 opened 2 years ago by zmughal
  6

• Failing t/SeqIO/bsml_sax.t due to 404 for DTD URL

  #376 opened a year ago by zmughal
  1

• Suggestion: create a CODEOWNERS file to connect modules with maintainers

  #377 opened 2 years ago by zmughal
  2

• Research notice: Sustainability in Open Source Projects

  #359 opened 2 years ago by yochannah
  1

• Why Bio::SeqFeature::Generic can only get Seqfeature's source item?

  #372 opened 2 years ago by CC3729
  3

• How do I grab the corresponding sequence from the mitochondrial genome?

  #373 opened 2 years ago by CC3729
  3

• Why Bio::SeqFeature::Generic can only get Seqfeature's source item?

  #371 opened 2 years ago by CC3729
  1

• Bio::Tools::GFF doesn't write eukaryotic multi-exon genes correctly

  #369 opened 3 years ago by krobison13
  7

• Taxonomy.t Tests Fails for Bio::Perl::

  #364 opened 3 years ago by joshuakirsch
  1

• Add Code of Conduct for OBF

  #365 opened 3 years ago by cjfields
  2

• make a CITATION.cff?

  #368 opened 3 years ago by hyphaltip
  1

• How to install Bioperl v1.7.2 in Ubuntu

  #367 opened 3 years ago by sekhwal
  0

• Bio::DB:Taxonomy won't connect to NCBI

  #363 opened 3 years ago by kastevens
  1

• problem with installing Bio::DB::Fasta module

  #360 opened 3 years ago by shaghayeghsoudi
  3

• t/SeqFeature/Generic.t failures

  #362 opened 3 years ago by eserte
  0

• Testing Bio::DB::NCBIHelper-1.7.6 failed

  #356 opened 3 years ago by tonyaseverson
  3

• Bio::Align::DNAStatistics to calculate Tajima-Nei Distance Fail

  #357 opened 3 years ago by MauriAndresMU1313
  6

• Possible precedence issue with control flow operator at Bio/DB/IndexedBase.pm line 805

  #355 opened 4 years ago by hyphaltip
  3

• Remove XML::DOM::XPath dependency

  #347 opened 4 years ago by cjfields
  10

• Sequin table format

  #349 opened 4 years ago by lskatz
  4

• db.h dependency

  #350 opened 4 years ago by lskatz
  2

• Unable to run ping_ensembl.pl

  #353 opened 4 years ago by thevinayrao
  2

• Bio::Procedural won't install

  #354 opened 4 years ago by threepistons
  4

• Bio/SeqIO.pm

  #352 opened 4 years ago by SAMANDOLL
  0

• Where to find moved packages?

  #351 opened 4 years ago by Stikus
  5

• EXCEPTION: Bio::Root::Exception Inappropriate ioctl for device

  #340 opened 5 years ago by moldach
  5

• Error thrown in OBO file parsing

  #341 opened 5 years ago by AndyMenzies
  2

• Installation of Bio::Tree::Tree fails under perl-5.30.3

  #344 opened 4 years ago by MartGro
  3

• Can't locate object method "no_sequences" via package "Bio::SimpleAlign"

  #342 opened 4 years ago by zhangleigloria
  2

• Problem with test for Bio::Root::HTTPget

  #337 opened 5 years ago by fschwach
  1

• Problem installing cpan Bio::Tree::Tree

  #336 opened 5 years ago by ddanilobm
  1

• Problem with Bio::AlignIO::meme

  #333 opened 5 years ago by SaierLaboratory
  1

• Why version 1.7.7 is not a release?

  #332 opened 5 years ago by serge2016
  1

• bioperl install fails due to failure in XML::DOM::XPath

  #334 opened 5 years ago by shelbyLanda
  0

• homepage in dist.ini 404s

  #330 opened 5 years ago by mr-c
  4

• t/Tree/TreeStatistics.t failures

  #329 opened 5 years ago by eserte
  5

• Bio::Tools::GFF _gffX_string update

  #327 opened 5 years ago by Juke34
  1

• Fails if GD.pm is not installed

  #326 opened 5 years ago by andk
  1