Pinned Repositories
alfred-image-utilities
Make quick edits to images
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
gg
Github Gists from the command line. On MAC OSX, it (will be) an Alfred Workflow!
gist-alfred
An alfred workflow for accessing gists
iex-api-python
A python wrapper for the IEX API
markdown-table-alfred
Generate a markdown table from your clibboard
Quiver-alfred
Search Quiver from Alfred
seq-collection
still
Unit testing for spreadsheets
tut
A collection of CSV/TSV Utilities
danielecook's Repositories
danielecook/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
danielecook/gist-alfred
An alfred workflow for accessing gists
danielecook/seq-collection
danielecook/gg
Github Gists from the command line. On MAC OSX, it (will be) an Alfred Workflow!
danielecook/tut
A collection of CSV/TSV Utilities
danielecook/python-cli-skeleton
Python argparse skeleton
danielecook/codebox-alfred
An alfred workflow for accessing codebox snippets.
danielecook/still
Unit testing for spreadsheets
danielecook/TIL-Tool
A tool for creating and indexing Today I Learned (TILs)
danielecook/danielecook.github.io
danielecook/seq-utilities-alfred
Alfred workflow with sequence utilities
danielecook/nucleus
Python and C++ code for reading and writing genomics data.
danielecook/vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
danielecook/andersenlab.github.io
Andersen Lab Website
danielecook/bam2fastq-nf
Convert a bam back to FASTQ
danielecook/bamsurgeon-nextflow
:chart_with_upwards_trend: :wrench: A Nextflow wrapper around the BAMSurgeon program - https://github.com/adamewing/bamsurgeon
danielecook/bash-it
A community Bash framework.
danielecook/BitVector
BitVector Implementation in Nim
danielecook/city-area
danielecook/cv
My Latex Resume template
danielecook/danielecook
danielecook/danielecook.com
Source files for danielecook.com
danielecook/DEC-Notes
danielecook/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
danielecook/nextflow-example
Example nextflow pipelines
danielecook/packages
List of packages for Nimble
danielecook/redun
Yet another redundant workflow engine
danielecook/sarek
Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
danielecook/TIL
danielecook/tx_germline_snps
Running burden testing with SKAT on TRACERx data