Pinned Repositories
601.647_CompGenomics_Seq
Code written for 601.647 Computational Genomics: Sequences at Johns Hopkins University.
abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
aoc-2023
bioconda-recipes
Conda recipes for the bioconda channel.
c_elegans_dRNAseq_analysis
Scripts used in the analysis of C elegans dRNAseq data
conda-env-builder
Build and maintain multiple custom conda environments all in one place.
conda-env-builder-feedstock
A conda-smithy repository for conda-env-builder.
conda-iuc
Conda recipes maintained by the Galaxy IUC.
conduit
CONDUIT - CONsensus Decomposition Utility In Transcriptome-assembly
sa_ord
NatPRoach's Repositories
NatPRoach/c_elegans_dRNAseq_analysis
Scripts used in the analysis of C elegans dRNAseq data
NatPRoach/conduit
CONDUIT - CONsensus Decomposition Utility In Transcriptome-assembly
NatPRoach/sa_ord
NatPRoach/abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
NatPRoach/aoc-2023
NatPRoach/bioconda-recipes
Conda recipes for the bioconda channel.
NatPRoach/conda-env-builder
Build and maintain multiple custom conda environments all in one place.
NatPRoach/conda-env-builder-feedstock
A conda-smithy repository for conda-env-builder.
NatPRoach/conda-iuc
Conda recipes maintained by the Galaxy IUC.
NatPRoach/conda-lock
Lightweight lockfile for conda environments
NatPRoach/conduit_publication_scripts
Scripts and test data used in the evaluation of CONDUIT prior to publication
NatPRoach/galaxy
Data intensive science for everyone.
NatPRoach/galaxytools
:microscope::books: Galaxy Tool wrappers
NatPRoach/gatk
Official code repository for GATK versions 4 and up
NatPRoach/hts-nim
nim wrapper for htslib for parsing genomics data files
NatPRoach/Iris
A module for improving the insertion sequences of structural variant calls
NatPRoach/meal_randomizer
Randomly pick from tagged recipes to deal with decision paralysis.
NatPRoach/pipenv-feedstock
A conda-smithy repository for pipenv.
NatPRoach/polyester
Bioconductor package "polyester", devel version. RNA-seq read simulator.
NatPRoach/PublicGalaxyTools
Tools written for Galaxy / GalaxyPro that can be made public
NatPRoach/pybedtools
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
NatPRoach/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
NatPRoach/pyo3
Rust bindings for the Python interpreter
NatPRoach/rs-gfa
GFA parser in Rust
NatPRoach/rust-msbwt
place for building up a msbwt resource in Rust
NatPRoach/samwell
Samwell: a python package for using genomic files... well
NatPRoach/SpliceAI
A deep learning-based tool to identify splice variants
NatPRoach/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
NatPRoach/temporary-tools
Non-reproducible, local tools that were installed to cn029
NatPRoach/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission