Pinned Repositories
ariane-et-le-monde
benchct
A qualitative evaluation tool which assess any pipeline results against a simulated dataset to obtain a clear understanding of its performance characteristics in answering a particular biological question.
cello
A string library
countTags
countTags is a c++ optimized software that counts occurrences of a set of k-mer signatures into a set of FASTQ (possibly gziped) files.
kamix
Index and query k-mer matrices in BGZF
makepipe
A wrapper around Makefile to create beautiful pipelines with reusable bricks and simple YAML config file.
simct
A configurable generator of simulated RNA-Seq data that can emulate any specific biological mechanism and provide robust data sets covering cases such as fusion genes (or fusions).
jaudoux's Repositories
jaudoux/kamix
Index and query k-mer matrices in BGZF
jaudoux/makepipe
A wrapper around Makefile to create beautiful pipelines with reusable bricks and simple YAML config file.
jaudoux/countTags
countTags is a c++ optimized software that counts occurrences of a set of k-mer signatures into a set of FASTQ (possibly gziped) files.
jaudoux/simct
A configurable generator of simulated RNA-Seq data that can emulate any specific biological mechanism and provide robust data sets covering cases such as fusion genes (or fusions).
jaudoux/ariane-et-le-monde
jaudoux/benchct
A qualitative evaluation tool which assess any pipeline results against a simulated dataset to obtain a clear understanding of its performance characteristics in answering a particular biological question.
jaudoux/cello
A string library
jaudoux/cractools-core
jaudoux/dokany
User mode file system library for windows with FUSE Wrapper
jaudoux/fontello
Iconic fonts scissors
jaudoux/jaudoux-beamer-theme
My personal Beamer theme (with Pandoc Interface)
jaudoux/Jellyfish
A fast multi-threaded k-mer counter
jaudoux/jmol-BCD-project
jaudoux/kad
K-mer Abundance Database
jaudoux/kallisto
Near-optimal RNA-Seq quantification
jaudoux/moby
Moby Project - a collaborative project for the container ecosystem to assemble container-based systems
jaudoux/nim-lapper
fast easy interval overlapping for nim-lang
jaudoux/simba-publication-pipeline
Pipeline used to generate SimBa publication results.
jaudoux/slivar
variant expressions, annotation, and filtering for great good.
jaudoux/sole-search
Sole search fork
jaudoux/SVtools
jaudoux/tami
Targeted mutation identification
jaudoux/vimrc
jaudoux/yaggo
Generate command line parser using getopt_long