slw287r

Code to decode life.

@geneplusShenzhen, PRC

Pinned Repositories

khashl
Generic hash table library in C
Language:C25 2 60
bamgd
GC~Depth plot of bam
Language:C10
bamio
bamlite with bam_write added back and built-in khashl
Language:C1 2 00
bwa-mem2
The next version of bwa-mem
Language:C++1 1 00
dep
Draw depth plot of bam
Language:C41
gtc
Re-implementation of get_trinuc_norm.R of SigMA
Language:C2 2 00
izlib
Drop in replacement for zlib.h by isa-l.
Language:C7 3 01
mntr
Monitor process (and subprocesses if any) mem and cpu usage
Language:C6 2 12
snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
Language:C++0 1 00
Templates
Templates for misc scripts
Language:C2 2 00

slw287r's Repositories

slw287r/izlib
Drop in replacement for zlib.h by isa-l.
Language:C7 3 01
slw287r/mntr
Monitor process (and subprocesses if any) mem and cpu usage
Language:C6 2 12
slw287r/dep
Draw depth plot of bam
Language:C41
slw287r/bamgd
GC~Depth plot of bam
Language:C10
slw287r/bwa-mem2
The next version of bwa-mem
Language:C++1 1 00
slw287r/Conifer
Calculate confidence scores from Kraken2 output
Language:C1 1 01
slw287r/ess
Calculate End-Signature-Score from BAM file
Language:C1 1 00
slw287r/ped
Pair-end depth of coverage of bam
Language:C1
slw287r/taxdb
Get blast names from NCBI taxdb.
Language:C1 1 0
slw287r/trimadap
Fast but inaccurate adapter trimmer for Illumina reads
Language:C1 1 01
slw287r/snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
Language:C++0 1 00
slw287r/await
28Kb, small memory footprint, single binary that run list of commands in parallel and waits for their termination
Language:C0 0
slw287r/gfatools
Tools for manipulating sequence graphs in the GFA and rGFA formats
Language:C0 0
slw287r/imgt
Get image dimensions
Language:C1 0
slw287r/isa-l
Intelligent Storage Acceleration Library
Language:C1 0
slw287r/klib
A standalone and lightweight C library
Language:C1 0
slw287r/ksw2
Global alignment and alignment extension
Language:C1 0
slw287r/libxlsxwriter
A C library for creating Excel XLSX files.
Language:C0 0
slw287r/llama2.c
Inference Llama 2 in one file of pure C
Language:Python0 0
slw287r/llm.c
LLM training in simple, raw C/CUDA
Language:Cuda0 0
slw287r/log.c
A simple logging library implemented in C99
Language:C0 0
slw287r/mgi-adapters
Trim adapters from MGI sequence data
Language:C0 0
slw287r/mSigma
Strain-level Identification of Genomes from Metagenomic Analysis for Biosurveillance
Language:C++1 0
slw287r/pggb
the pangenome graph builder
Language:Shell0 0
slw287r/sdust
Symmetric DUST for finding low-complexity regions in DNA sequences
Language:C1 0
slw287r/sqlite3s
sqlite3 lib with secure support
Language:C2 0
slw287r/TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
Language:Python0 0
slw287r/usher
Ultrafast Sample Placement on Existing Trees (x86-64 static build)
Language:C++0 0
slw287r/vsearch
Versatile open-source tool for microbiome analysis
Language:C++0 0
slw287r/x9
high performance message passing library
Language:C0 0