Issues
- 1
Missing values for multi-allelic variants result in large negative numbers in `.format("AD")`, not all the same
#304 opened by blaiseli - 2
Skip the warnings?
#303 opened by AugustinMro - 6
##INFO fields being dropped
#302 opened by FlexLuthORF - 3
Multiallelic VCF with annotation in INFO field doesn't query all available infromation
#301 opened by KalinNonchev - 0
Adding new variant record
#299 opened by LindoNkambule - 1
- 0
- 6
Provide access to index stats
#294 opened by jeromekelleher - 1
Could you bump a new version to the pip
#292 opened by graphenn - 2
Crash with single GT allele value - UnicodeDecodeError: 'ascii' codec can't decode byte 0x81 in position 1: ordinal not in range(128)
#291 opened by davmlaw - 1
Add setter for POS
#288 opened by allytrope - 7
cyvcf2 wheel build fail on 0.30.19~0.30.22 (python3.11 + arm64 + debain bookworm)
#274 opened by graphenn - 4
Importing 64bit integers in FORMAT?
#285 opened by barneyhill - 0
- 3
Vulnerable shared libraries might make cyvcf2 vulnerable. Can you help upgrade to patch versions?
#239 opened by MikeWazoWski123 - 6
Windows 11 Installing Issue
#243 opened by genewater - 5
Can't install from source
#240 opened by dprat - 7
- 5
Issues with using String in format field
#259 opened by ThomVett - 2
Processing BED?
#282 opened by dbolser - 2
Dealing with missing values in INFO column
#279 opened by gnxsf - 8
Floating point imprecision
#277 opened by 3ng7n33r - 3
pip update error from 0.30.18 to 0.30.20
#271 opened by jowodo - 2
- 3
variant.format('GT') yields unexpected string format
#275 opened by gnxsf - 5
Conda packages are out of date
#269 opened by tomwhite - 3
Issues with cyvcf2 memory allocation
#273 opened by adrienlemeur - 5
Linux packages for 0.30.20 are missing from pypi
#270 opened by tomwhite - 0
Run tests on Python 3.11 in CI
#267 opened by tomwhite - 1
Remove support for Python 3.6
#265 opened by tomwhite - 1
Run wheel build more regularly
#247 opened by tomwhite - 2
Writing to GT field
#261 opened by reveloff-ucsd - 3
Streaming VCFs using smart_open?
#260 opened by dbrami - 1
Use supported version of gh-action-pypi-publish
#254 opened by tomwhite - 6
- 5
- 5
NumPy version compatibility
#248 opened by tomwhite - 3
MacOS arm64 wheels fail with libdeflate error
#252 opened by tomwhite - 0
Build macOS wheels for Python 3.10
#245 opened by tomwhite - 1
not able to read vcf file for parsing
#244 opened - 0
- 5
Issue querying db's made with latest cyvcf2
#238 opened by matthdsm - 1
modify VCF header
#237 opened by aude-darracq - 1
`num_unknown` incorrect when `gts012=True`
#236 opened by WSDeWitt - 4
Merging lines?
#235 opened by CholoTook - 3
Can I get a variant by ID?
#234 opened by CholoTook - 6
- 2
github actions wheel build is broken
#230 opened by grahamgower - 1
- 14