Pinned Repositories
adrien.le-meur
Online CV
adrien.le-meur.github.io
ani-m
Average Nucleotide Identity analysis with MUMmer under the hood
atelierNGS
Scripts pour l'atelier NGS
bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Best-README-Template
An awesome README template to jumpstart your projects!
bibliography
My bibliography Adrien Le Meur
bioinfo
Various bioinformatics tools
Comparative_Genomics_AMI2B
comparativeGenomicProject
Projet Génomique Comparative - Adrien & Audrey & Leila
adrienlemeur's Repositories
adrienlemeur/adrien.le-meur
Online CV
adrienlemeur/adrien.le-meur.github.io
adrienlemeur/atelierNGS
Scripts pour l'atelier NGS
adrienlemeur/bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
adrienlemeur/Best-README-Template
An awesome README template to jumpstart your projects!
adrienlemeur/bibliography
My bibliography Adrien Le Meur
adrienlemeur/bioinfo
Various bioinformatics tools
adrienlemeur/dockerfiles
adrienlemeur/fastq-dl
Download FASTQ files from SRA or ENA repositories.
adrienlemeur/full_table_samples
Liste complète des fichiers utilisés dans le cadre du stage "Identification d'ADN de pathogène dans des échantillons anciens"
adrienlemeur/genotube
genotube
adrienlemeur/github-markdown-toc
Easy TOC creation for GitHub README.md
adrienlemeur/kraken2
The second version of the Kraken taxonomic sequence classification system
adrienlemeur/maketube
maketube is an artificial genome generator for Mycobacterium tuberculosis
adrienlemeur/mektub
adrienlemeur/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
adrienlemeur/MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
adrienlemeur/mykrobe
Antibiotic resistance prediction in minutes
adrienlemeur/nicolas_strain
adrienlemeur/partitionFinder
python script to generate a multisequence matrix from VCF
adrienlemeur/phylotax_builder
adrienlemeur/projetweb
adrienlemeur/public_pres
adrienlemeur/samclip
Filter SAM file for soft and hard clipped alignments
adrienlemeur/sentieon-scripts
Helper scripts for biological data processing from Sentieon
adrienlemeur/SnpEff
adrienlemeur/TB-detective
Repo for TB-detective
adrienlemeur/TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
adrienlemeur/twine-css-template
Twine2 is a great tool for beginners to make games, but there aren't customization options out of the box, and the way to use CSS is not well documented. This template is a well-commented basic reset that allows you to make your game look unique without knowing too much about CSS.
adrienlemeur/vcf