Pinned Repositories
bycatch
condamage
Score and plot post-mortem deamination patterns
demes-c
C library for parsing Demes demographic models
demes-slim
Demes/SLiM interoperability.
demes-spec
demes' data model specification
demesdraw
Drawing functions for Demes demographic models
genomatnn
Predicts adaptive introgression using a CNN trained on genotype matrices.
PP5mC
A pre-processing toolkit for 5mC calling from HBS-seq data.
sexassign
Genetic sex determination using read dosage
grahamgower's Repositories
grahamgower/demesdraw
Drawing functions for Demes demographic models
grahamgower/genomatnn
Predicts adaptive introgression using a CNN trained on genotype matrices.
grahamgower/sexassign
Genetic sex determination using read dosage
grahamgower/demes-slim
Demes/SLiM interoperability.
grahamgower/PP5mC
A pre-processing toolkit for 5mC calling from HBS-seq data.
grahamgower/condamage
Score and plot post-mortem deamination patterns
grahamgower/demes-c
C library for parsing Demes demographic models
grahamgower/demes-spec
demes' data model specification
grahamgower/stdpopsim
A library of standard simulation models for msprime
grahamgower/adding-species-manuscript
manuscript materials for the adding species paper
grahamgower/bioconda-recipes
Conda recipes for the bioconda channel.
grahamgower/cyvcf2
cython + htslib == fast VCF and BCF processing
grahamgower/demes-paper
Manuscript for the demes package for demographic model specification.
grahamgower/demes-python
Tools for describing and manipulating demographic models.
grahamgower/demes-r
R library for parsing Demes demographic models
grahamgower/fallout2-ce
Fallout 2 for modern operating systems
grahamgower/fwdpy11
Forward-time simulation in Python using fwdpp
grahamgower/genomcmcgan
Source code for my Master thesis project with title 'Demographic inference using MCMC-coupled GAN'. Developed in the Racimo group, GLOBE Institute, University of Copenhagen.
grahamgower/icfp
grahamgower/island_thrush_scripts
Scripts used in the analysis of Reeve et al.
grahamgower/msprime
A reimplementation of Hudson's classical ms simulator for modern data sets.
grahamgower/msprime-1.0-paper
Publication describing msprime 1.0
grahamgower/optax
Optax is a gradient processing and optimization library for JAX.
grahamgower/simGL
Simulate genotype likelihoods from tree sequence data
grahamgower/SLiM
Selection on Linked Mutations: A forward population genetic simulation for studying linkage effects, such as hitchhiking, background selection, and Hill-Robertson interference.
grahamgower/slim-feedstock
A conda-smithy repository for slim.
grahamgower/smcpp
SMC++ infers population history from whole-genome sequence data.
grahamgower/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
grahamgower/synacore-challenge
grahamgower/tskit
The tree sequence toolkit