daviesrob

Pinned Repositories

bambi
A set of programs to manipulate SAM/BAM/CRAM files, using HTSLIB
Language:C00
bamtools
C++ API & command-line toolkit for working with BAM data
Language:C++00
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Language:C00
bwa
Burrow-Wheeler Aligner
Language:C3 2 00
hts-binaries
Build script to make binary distributions of HTSlib, samtools and bcftools
Language:C0 2 00
hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
Language:TeX11
htscodecs
Custom compression for CRAM and others.
Language:C0 1 00
mmonitor
Very simple memory monitor
Language:Perl11
pthread_mon
Pthreads locking monitor
Language:C10
samtools
This is not the official development repository for samtools. For that you should use samtools/samtools.
Language:C10

daviesrob's Repositories

daviesrob/bwa
Burrow-Wheeler Aligner
Language:C3 2 00
daviesrob/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
Language:TeX11
daviesrob/mmonitor
Very simple memory monitor
Language:Perl11
daviesrob/pthread_mon
Pthreads locking monitor
Language:C10
daviesrob/samtools
This is not the official development repository for samtools. For that you should use samtools/samtools.
Language:C10
daviesrob/bambi
A set of programs to manipulate SAM/BAM/CRAM files, using HTSLIB
Language:C00
daviesrob/bamtools
C++ API & command-line toolkit for working with BAM data
Language:C++00
daviesrob/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Language:C00
daviesrob/hts-binaries
Build script to make binary distributions of HTSlib, samtools and bcftools
Language:C0 2 00
daviesrob/htscodecs
Custom compression for CRAM and others.
Language:C0 1 00
daviesrob/htslib
C library for high-throughput sequencing data formats. This is not the official repository, see samtools/htslib for that.
Language:C1 01
daviesrob/htslib-crypt4gh
HTSlib crypt4gh plug-in
Language:C0 0
daviesrob/klib
A standalone and lightweight C library
Language:C
daviesrob/manconvert
Convert troff-style man pages to doxygen source or formatted HTML
Language:Perl
daviesrob/openssh-portable
Portable OpenSSH
Language:C1 0
daviesrob/oss-fuzz
OSS-Fuzz - continuous fuzzing of open source software.
daviesrob/qu-mfeindex
DNA sequence indexer originally developed for MFEprimer-2.0. This is not the official repository, see quwubin/qu-mfeindex for that.
Language:Python
daviesrob/ref-cache-nginx
Configuration files for the nginx web server to make a CRAM reference sequence cache
1 0
daviesrob/teepot
Language:C
daviesrob/teleport
daviesrob/vcf-validator
Validator for VCF implemented using C++11
Language:C++1 0
daviesrob/vgp-tools
Language:C
daviesrob/ViralConsensus
Fast viral consensus genome reconstruction
daviesrob/www.htslib.org
The http://www.htslib.org/ web site
Language:HTML