samtools

Pinned Repositories

bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Language:C686 48 2k240
hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
Language:TeX661 101 436172
htscodecs
Custom compression for CRAM and others.
Language:C30 13 1718
htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
Language:Java285 50 597245
htslib
C library for high-throughput sequencing data formats
Language:C815 62 720443
htslib-plugins
Plugins for use with HTSlib
Language:C9 16 57
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Language:C1.6k 100 1.3k580
sapi
Sequence Alignment Programming Interface
Language:C7 17 00
tabix
Note: tabix and bgzip binaries are now part of the HTSlib project.
Language:C91 22 1340
www.htslib.org
The http://www.htslib.org/ web site
Language:HTML8 13 812

samtools's Repositories

samtools/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Language:C1.6k 100 1.3k580
samtools/htslib
C library for high-throughput sequencing data formats
Language:C815 62 720443
samtools/bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Language:C686 48 2k240
samtools/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
Language:TeX661 101 436172
samtools/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
Language:Java285 50 597245
samtools/tabix
Note: tabix and bgzip binaries are now part of the HTSlib project.
Language:C91 22 1340
samtools/htscodecs
Custom compression for CRAM and others.
Language:C30 13 1718
samtools/htslib-plugins
Plugins for use with HTSlib
Language:C9 16 57
samtools/www.htslib.org
The http://www.htslib.org/ web site
Language:HTML8 13 812
samtools/sapi
Sequence Alignment Programming Interface
Language:C7 17 00
samtools/htsjdk-next-beta
Staging ground for the development of the next major version of HTSJDK
Language:Java6 10 233
samtools/samtools.github.com
The http://samtools.github.io/ (master) and legacy http://samtools.sourceforge.net/ (sf-pages) web sites
Language:CSS4 13 01
samtools/c-maint
Maintenance scripts used with the htslib/samtools/bcftools repositories
Language:Perl3 15 03
samtools/htslib-crypt4gh
HTSlib crypt4gh plug-in
Language:C2 7 22
samtools/klib
A standalone and lightweight C library
Language:C1 0