ghuls

Bioinformatician in Laboratory of Computational Biology (part of KU Leuven Center for Human Genetics and the VIB Center for Brain and Disease Research.).

@aertslab

Pinned Repositories

create_cisTarget_databases
Create cisTarget databases
Language:Python34 9 498
install_aspera_connect
Install latest version of Aspera Connect and show example how to use it for downloading sequening data.
Language:Shell16 6 010
popscle_helper_tools
Helper tools for popscle
Language:Shell19 7 106
single_cell_toolkit
Tools for correcting single cell barcodes for various scATAC-seq techniques.
Language:Shell22 6 23
bx-python-fixed-history
bx-python imported with hg-fast-export from https://bitbucket.org/james_taylor/bx-python/ with missing patched available in https://github.com/bxlab/bx-python added
Language:Python1 2 00
moreutils-parallel
Improve parallel of moreutils (http://joeyh.name/code/moreutils/)
Language:C3 2 21
multigrep
Grep for multiple patterns at once in one or more files and allow grepping in certain columns only.
Language:Shell5 2 01
ppx2
Windows xargs clone: PPX2
Language:C3 2 01
re7zip
7zip version capable of downloading files from archives on HTTP servers
Language:Java10 3 02
polars
Dataframes powered by a multithreaded, vectorized query engine, written in Rust
Language:Rust27.1k 152 7.7k1.7k

ghuls's Repositories

ghuls/ppx2
Windows xargs clone: PPX2
Language:C3 2 01
ghuls/polars
Fast multi-threaded DataFrame library in Rust and Python
Language:Rust1 1 00
ghuls/arrow2
transmute-free Rust library to work with the Arrow format
Language:Rust0 1 00
ghuls/arrow-rs
Official Rust implementation of Apache Arrow
Language:Rust0 0
ghuls/bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Language:C0 0
ghuls/bigtools
ghuls/biopython
Official git repository for Biopython (originally converted from CVS)
Language:Python0 0
ghuls/cellsnp-lite
Efficient genotyping bi-allelic SNPs on single cells
Language:C0 0
ghuls/cluster-buster
Language:C++2 0
ghuls/coreutils
Cross-platform Rust rewrite of the GNU coreutils
ghuls/dragonnfruit
A method for analyzing scATAC-seq experiments.
ghuls/frawk
an efficient awk-like language
Language:Rust1 0
ghuls/genomic_ranges
enomic ranges: PyRanges-like functionality using Polars dataframes instead of Pandas dataframes
Language:Python
ghuls/hck
A sharp cut(1) clone.
Language:Rust0 0
ghuls/lda
Topic modeling with latent Dirichlet allocation using Gibbs sampling
ghuls/maturin
Build and publish crates with pyo3, rust-cpython and cffi bindings as well as rust binaries as python packages
ghuls/mrpowers-benchmarks
MrPowers benchmarks for Pandas, Dask, Vaex, Polars, Spark and Julia
Language:Jupyter Notebook0 0
ghuls/oxbow
Read specialized NGS formats as data frames in R, Python, and more.
ghuls/plda
PLDA: Parallel Latent Dirichlet Allocation in C++
Language:C++0 0
ghuls/polars-book
Book documentation of the Polars DataFrame library
Language:Jupyter Notebook0 0
ghuls/polars-feedstock
A conda-smithy repository for polars.
Language:Shell0 0
ghuls/pyfasta
fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
ghuls/pyo3
Rust bindings for the Python interpreter
Language:Rust0 0
ghuls/rustybam
bioinformatics toolkit in rust
Language:Rust0 0
ghuls/seq
A high-performance, Pythonic language for bioinformatics
Language:C++1 0
ghuls/stamp
STAMP
Language:C++0 0
ghuls/TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
Language:Perl0 0
ghuls/vireo
Demultiplexing pooled scRNA-seq data with or without genotype reference
Language:Python0 0
ghuls/vmtouch
Portable file system cache diagnostics and control
Language:C0 01
ghuls/weblogo
WebLogo 3: Sequence Logos redrawn
Language:Python2 0