koriege

on high throughput NGS data playground

Leibniz Institute on Aging

Pinned Repositories

bashbone
A bash/biobash library for workflow and pipeline design
Language:Shell8 4 03
muvac
MUVAC implements multiple variant calling options from Exome-Seq/WG-Seq or RNA-Seq data. It offers free GATK best-practices in an optimized, parallelized fashion.
Language:Shell4 2 32
rippchen
Peak calling from *IP-Seq or differential expression- and ontology analysis from RNA-Seq data
Language:Shell2 5 01
acctotax
Get NCBI Taxonomy lineages and subtrees from various queries
Language:Perl1 1 00
bashbone
A bash/biobash library for workflow and pipeline design
Language:Shell1 1 01
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 1 00
dupsifter
WGBS/WGS PCR Duplicate Marking
Language:C0 0 00
gorap
Genomewide ncRNA Annotation Pipeline
Language:Perl7 2 11
muvac
MUVAC implements multiple variant calling options from Exome-Seq/WG-Seq or RNA-Seq data. It offers free GATK best-practices in an optimized, parallelized fashion.
Language:Shell0 1 00
rippchen
Peak calling from *IP-Seq or differential expression- and ontology analysis from RNA-Seq data
Language:Shell0 1 00

koriege/gorap
Genomewide ncRNA Annotation Pipeline
Language:Perl7 2 11
koriege/acctotax
Get NCBI Taxonomy lineages and subtrees from various queries
Language:Perl1 1 00
koriege/bashbone
A bash/biobash library for workflow and pipeline design
Language:Shell1 1 01
koriege/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 1 00
koriege/dupsifter
WGBS/WGS PCR Duplicate Marking
Language:C0 0 00
koriege/galaxy-atoms
The directory contains well prepared Guided Tours for GALAXY
Language:HTML0 1 00
koriege/galaxy-posters
This repository collects all demo materials, such as slides and posters, of de.STAIR talks, conferences, symposia, etc.
Language:TeX0 2 00
koriege/galaxy-tools
Language:Shell0 1 00
koriege/galaxy-workflow-generator
:whale::bar_chart::books: Docker Images for NGS data preprocessing
Language:HTML0 1 00
koriege/muvac
MUVAC implements multiple variant calling options from Exome-Seq/WG-Seq or RNA-Seq data. It offers free GATK best-practices in an optimized, parallelized fashion.
Language:Shell0 1 00
koriege/rippchen
Peak calling from *IP-Seq or differential expression- and ontology analysis from RNA-Seq data
Language:Shell0 1 00
koriege/galaxy-training-material
badges, agendas, flyers, and sharable documents of all de.STAIR training events
Language:HTML1 0
koriege/galaxy-webhooks
Language:JavaScript1 0
koriege/galaxy-workflows
2 0
koriege/ssrc
Split Sensitive Read Counter
Language:Perl2 0