Pinned Repositories
bcf2ls
Proof-of-principle implementation of BCF2 parser
bcftools
This is unofficial experimental development repository for BCFtools.
bxcheck
Toolset for QC and processing 10x genomics data
htslib
C library for high-throughput sequencing data formats
mpileup-tests
Test cases for mpileup variant calling
samtools
utils
Random utilities
vg
tools for working with variation graphs
pd3's Repositories
pd3/bxcheck
Toolset for QC and processing 10x genomics data
pd3/bcftools
This is unofficial experimental development repository for BCFtools.
pd3/htslib
C library for high-throughput sequencing data formats
pd3/utils
Random utilities
pd3/bcf2ls
Proof-of-principle implementation of BCF2 parser
pd3/mpileup-tests
Test cases for mpileup variant calling
pd3/samtools
pd3/vg
tools for working with variation graphs
pd3/c-maint
Maintenance scripts used with the htslib/samtools/bcftools repositories
pd3/clinical-filter
filtering trio-based genetic variants in VCFs for clinical review
pd3/clinicalFilter
Clinical filtering
pd3/cnv-paper-2020
pd3/data_formats
pd3/DDDNonCoding2017
Code for paper published in March, 2017 analysing the role of de novo mutations in severe developmental disorders (part of the deciphering developmental disorders project).
pd3/Eagle
Haplotype phasing software
pd3/gnome-shell-extensions
Various extensions for the gnome-shell
pd3/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
pd3/ips-seq
pd3/matplotlib
matplotlib: plotting with Python
pd3/ngs-vm
Automation of the IT infrastructure for the NGS course
pd3/optimap
Optical mapping
pd3/pbwt
Implementation of Positional Burrows-Wheeler Transform for genetic data
pd3/pd3.github.io
pd3/statsview
pd3/variant_calling
pd3/www.htslib.org
The http://www.htslib.org/ web site