pd3

pd3 @ sanger . ac . uk

Wellcome Sanger Institute

Pinned Repositories

bcf2ls
Proof-of-principle implementation of BCF2 parser
Language:C1 3 00
bcftools
This is unofficial experimental development repository for BCFtools.
Language:C5 5 02
bxcheck
Toolset for QC and processing 10x genomics data
Language:C6 4 02
htslib
C library for high-throughput sequencing data formats
Language:C4 6 02
mpileup-tests
Test cases for mpileup variant calling
Language:Perl1 2 23
samtools
Language:C1 5 00
utils
Random utilities
Language:Python2 3 00
vg
tools for working with variation graphs
Language:C++1 3 01

pd3's Repositories

pd3/bxcheck
Toolset for QC and processing 10x genomics data
Language:C6 4 02
pd3/bcftools
This is unofficial experimental development repository for BCFtools.
Language:C5 5 02
pd3/htslib
C library for high-throughput sequencing data formats
Language:C4 6 02
pd3/utils
Random utilities
Language:Python2 3 00
pd3/bcf2ls
Proof-of-principle implementation of BCF2 parser
Language:C1 3 00
pd3/mpileup-tests
Test cases for mpileup variant calling
Language:Perl1 2 23
pd3/samtools
Language:C1 5 00
pd3/vg
tools for working with variation graphs
Language:C++1 3 01
pd3/c-maint
Maintenance scripts used with the htslib/samtools/bcftools repositories
Language:Shell2 0
pd3/clinical-filter
filtering trio-based genetic variants in VCFs for clinical review
Language:Python1 0
pd3/clinicalFilter
Clinical filtering
Language:Python1 0
pd3/cnv-paper-2020
Language:Perl3 0
pd3/data_formats
Language:TeX2 0
pd3/DDDNonCoding2017
Code for paper published in March, 2017 analysing the role of de novo mutations in severe developmental disorders (part of the deciphering developmental disorders project).
Language:R3 0
pd3/Eagle
Haplotype phasing software
Language:C++3 0
pd3/gnome-shell-extensions
Various extensions for the gnome-shell
Language:JavaScript3 0
pd3/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
Language:TeX3 0
pd3/ips-seq
Language:Perl1 0
pd3/matplotlib
matplotlib: plotting with Python
Language:Python3 0
pd3/ngs-vm
Automation of the IT infrastructure for the NGS course
Language:Shell2 0
pd3/optimap
Optical mapping
Language:C++3 0
pd3/pbwt
Implementation of Positional Burrows-Wheeler Transform for genetic data
Language:C3 0
pd3/pd3.github.io
Language:CSS3 0
pd3/statsview
Language:JavaScript2 0
pd3/variant_calling
Language:TeX2 0
pd3/www.htslib.org
The http://www.htslib.org/ web site
Language:HTML3 0