telatin/bamtocov

Issues

• [BUG] run time exceeds > 6 hours human exome

  #12 opened 3 months ago by ESDeutekom
  1

• `bamtocov` generated "ERROR: coverage went backwards from 0 to 0"

  #11 opened a year ago by ChooseelBunsuwansakul
  0

• "invalid integer: everything" when trying to run BamToCov

  #10 opened 2 years ago by leone93
  3

• add an argument for bamtocov to allow the extension of reads to fragment size from single-end sequencing data

  #6 opened 3 years ago by kerenzhou062
  4

• How did bamtocov deal with paired-end bam from stranded libraries?

  #9 opened 2 years ago by kerenzhou062
  1

• A way to calculate coverage breadth

  #8 opened 3 years ago by BharatRaviIyengar
  2

• It will be very useful to add an option "--rpm" to allow users to calculate the Reads per million mapped reads

  #7 opened 3 years ago by kerenzhou062
  4

• Missing information of strand function

  #5 opened 3 years ago by denise0593
  2

• Multiple BAMs and no target can count chromosomes instead

  #4 opened 3 years ago by telatin
  0

• Multibam processing using multiple threads

  #3 opened 3 years ago by telatin
  0

• [BUG] Avoid allowing --report when not target is supplied

  #1 opened 3 years ago by telatin
  1

• [BUG] Multiple bams and no regions produce inconsistent behaviour

  #2 opened 3 years ago by telatin
  1