mbhall88/rasusa

Issues

• Estimate genome size automatically

  #14 opened 25 days ago by tseemann
  9

• Multi-threading approach

  #55 opened 3 years ago by Teklu67
  8

• Suggestion: replace needletail by noodles and niffler

  #25 opened a month ago by natir
  2

• Error when using --output twice

  #70 opened 8 months ago by pmielle
  2

• Error

  #69 opened 8 months ago by nbenzakour
  1

• Support for subsampling alignment to uniform coverage

  #17 opened 8 months ago by IsmailM
  5

• Generating only half of the target depth

  #64 opened a year ago by npdungca
  6

• Error: unable to gather read lengths for the first input file

  #65 opened a year ago by npdungca
  2

• won't detect input file

  #63 opened a year ago by rmormando
  1

• Question: there is a way to start from a bam file instead of a fastq?

  #62 opened a year ago by leone93
  1

• illumina read input error

  #60 opened 2 years ago by IndreNav
  2

• Random sampling based on bases for the metagenomic dataset

  #59 opened 2 years ago by AnupamGautam
  1

• Add number and fraction options

  #34 opened 2 years ago by mbhall88
  0

• Does rasusa outputs reads that still cover the entire original genome?

  #56 opened 3 years ago by MostafaYA
  1

• Feature: Min/max coverage threshold

  #37 opened 3 years ago by bbalog87
  2

• Suggestion: Raise warning when desired level of coverage is not possible

  #36 opened 3 years ago by k3yavi
  1

• Docker image issue

  #35 opened 3 years ago by genignored
  9

• Input parameter for number of bases in addition to coverage and genome size

  #30 opened 3 years ago by tomazberisa
  6

• Calculate genome size from an index file

  #31 opened 3 years ago by mbhall88
  1

• Compress output when requested

  #27 opened 3 years ago by mbhall88
  5

• `HashSet` is slow

  #26 opened 3 years ago by natir
  3

• Lower than expected coverage for illumina paired end reads

  #22 opened 3 years ago by ilyavs
  9

• Multi-threading approach implementation

  #20 opened 4 years ago by camilogarciabotero
  3

• Finer control over coverage

  #19 opened 4 years ago by nirajmehta96
  2

• Support for paired-end reads?

  #15 opened 5 years ago by tseemann
  5

• Relationship to filtlong

  #16 opened 5 years ago by tseemann
  2

• add homebrew recipe

  #13 opened 5 years ago by mbhall88
  2

• Create bioconda recipe

  #9 opened 5 years ago by mbhall88
  0

• add singularity option

  #12 opened 5 years ago by mbhall88
  0

• add docker option

  #11 opened 5 years ago by mbhall88
  0

• Distribute on crates.io

  #8 opened 5 years ago by mbhall88
  0

• Add Licence

  #10 opened 5 years ago by mbhall88
  0

• Write README

  #7 opened 5 years ago by mbhall88
  1

• Add code docs

  #6 opened 5 years ago by mbhall88
  0

• Add logging

  #5 opened 5 years ago by mbhall88
  0

• Iterate over input file and output required reads

  #4 opened 5 years ago by mbhall88
  1

• Randomly select reads until target length reached

  #3 opened 5 years ago by mbhall88
  0

• Calculate target total length

  #2 opened 5 years ago by mbhall88
  0

• Get read lengths for an input file

  #1 opened 5 years ago by mbhall88
  0