Pinned Repositories
doc-tutorial-template
Template for the Read the Docs tutorial
MGCplotter
Microbial Genome Circular plotting tool for comparative genomics using Circos
QC_pipeline
Quick assessment of MiSeq reads (fastqc, species identification, coverage and estimated genome size)
SnakePipelines
A bioinformatics workflow to process and analyze the Next Generation Sequencing (NGS) reads
SydneyPhyloWorkshop
Sydney Phylogenetics Workshop
tutorials
In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!
dorado
Oxford Nanopore's Basecaller
amr
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
MostafaYA's Repositories
MostafaYA/QC_pipeline
Quick assessment of MiSeq reads (fastqc, species identification, coverage and estimated genome size)
MostafaYA/SnakePipelines
A bioinformatics workflow to process and analyze the Next Generation Sequencing (NGS) reads
MostafaYA/doc-tutorial-template
Template for the Read the Docs tutorial
MostafaYA/MGCplotter
Microbial Genome Circular plotting tool for comparative genomics using Circos
MostafaYA/SydneyPhyloWorkshop
Sydney Phylogenetics Workshop
MostafaYA/tutorials
In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!