Pinned Repositories
awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
dotfiles
Introgression-Tutorial
A tutorial on genomic tests for introgression
SysMIC-1
Scripts developed following the text book of SysMIC course in Systems Biology (http://sysmic.ac.uk/moodle/)
phenopolis_genomics_browser
Python API and React frontend for the Phenopolis Genomics Browser
genevalidator
GeneValidator: Identify problems with predicted genes
genevalidatorapp
A web wrapper for GeneValidator
NpSearch
NpSearch: Search for Neuropeptides
sequenceserver
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
IsmailM's Repositories
IsmailM/dotfiles
IsmailM/npsearch
NpSearch is a tool for identifying neuropeptides from genomic and proteomic data
IsmailM/vscode-run-terminal-flow
Run selection in terminal and move cursor to next line
IsmailM/annotatr
Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.
IsmailM/boostme
R package to impute methylation within WGBS using machine learning
IsmailM/CAMDAC
IsmailM/cyvcf2
cython + htslib == fast VCF and BCF processing
IsmailM/deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
IsmailM/deepcpg
Deep neural networks for predicting CpG methylation
IsmailM/ena-bulk-webincli
Validate and submit reads using Webin-CLI in batch.
IsmailM/FAME
IsmailM/gemBS
GEMBS is a bioinformatic pipeline designed for hightroughput analysis of DNA methylation from whole genome bisulfites sequencing data (WGBS).
IsmailM/gemBS-rs
A re-write of the gemBS pipeline framework in Rust
IsmailM/gitbookTest
IsmailM/javascript
JavaScript Style Guide
IsmailM/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
IsmailM/ncbi-blast-dbs
Fast download BLAST databases from NCBI.
IsmailM/netlify-functions-workshop
Netlify Serverless Functions Workshop
IsmailM/opentrials
OpenTrials is an app to explore, discover, and submit information on clinical trials.
IsmailM/Overland_android
GPS logger for Android devices
IsmailM/Palindrome-checker
IsmailM/react-native-debugger
The standalone app based on official debugger of React Native, and includes React Inspector / Redux DevTools
IsmailM/react-native-responsive-layout
Easy way to implement responsive layouts and grids.
IsmailM/RETFound_MAE
RETFound - A foundation model for retinal image
IsmailM/tapestry
IsmailM/tinacms.org
Organization site for general info, documentation, blogs & contribution guidelines.
IsmailM/vscode-run-external
VS Code extension to send the current selection (or the current line) to iTerm
IsmailM/wgbs-pipeline
ENCODE WGBS pipeline
IsmailM/wgs-js
Rendering a table from human Whole genome sequencing data after segregation
IsmailM/www_personalgenomes_org