wurmlab/sequenceserver

Issues

• don't unfold the first 2 graphs

  #807 opened 5 months ago by yannickwurm
  1

• BLAST button not working with sequenceserver 3.1.3 and tree widget enabled

  #784 opened 3 months ago by lukaszsobala
  5

• circos view breaking

  #817 opened 3 months ago by yannickwurm
  4

• BLAST Database error: Error pre-fetching sequence data

  #818 opened 3 months ago by Le-lopez
  0

• Pairwise alignments are misformatted in PDF output

  #815 opened 4 months ago by yannickwurm
  0

• CSRF blocked the API request

  #809 opened 5 months ago by wangqian0306
  3

• fix sidebar and FASTA ID wrapping

  #802 opened 5 months ago by djleite
  1

• Broken tooltip and (+/-) icon

  #795 opened 5 months ago by joko3ono
  0

• Advanced params help modal should be bigger - take up more of the page so we don't need to scroll as much

  #738 opened 10 months ago by yannickwurm
  2

• Capitalisation and punctuation in report

  #789 opened 5 months ago by yannickwurm
  0

• BLAST Submission form formatting improvements

  #788 opened 5 months ago by yannickwurm
  0

• Tooltip positioning broken

  #696 opened 5 months ago by tadast
  1

• Change text download label from "Pairwise" to "Text"

  #750 opened 5 months ago by yannickwurm
  0

• When exporting "Kablammo" plot as SVG or PNG, would be useful to have the query index & name appended

  #736 opened 6 months ago by photocyte
  4

• blast/task.rb does not find blast binaries

  #781 opened 6 months ago by kuntzagk
  3

• version bump -> NCBI 2.2.15

  #703 opened 7 months ago by yannickwurm
  0

• New install crashing if blast is not installed

  #761 opened 7 months ago by tadast
  0

• Support optional job timeout

  #770 opened 7 months ago by nathanweeks
  0

• Add sam output format? For those funny cases where opening in genome browser may be best?

  #769 opened 7 months ago by yannickwurm
  0

• "Error Obtaining Databases" on sequenceserver launch

  #763 opened 8 months ago by wolfgangrumpf
  0

• New/Clean install doesn't work

  #755 opened 8 months ago by wolfgangrumpf
  8

• exporting large numbers of hit sequences creates too long a command-line

  #751 opened 8 months ago by yannickwurm
  0

• genome fastas beginning with Ns aren't correctly identified

  #727 opened 10 months ago by yannickwurm
  1

• Remember user defaults

  #715 opened a year ago by yannickwurm
  1

• Number of queries stats in job.yaml

  #669 opened a year ago by tadast
  0

• how to use tree structure of database lists in docker command

  #674 opened a year ago by wangc1106
  1

• Sidebar Element Click Causes Exception and User Work Loss

  #712 opened a year ago by gorsyan
  2

• Job 404 should not throw an exception

  #666 opened a year ago by tadast
  0

• Migrate testing from Travis to Github Actions

  #653 opened a year ago by yannickwurm
  1

• NoMethodError for SequenceServer.makeblastdb.any_to_format?

  #707 opened a year ago by thekswenson
  1

• xml import is unclear

  #660 opened 2 years ago by yannickwurm
  1

• installation problems on Ubuntu 23.10

  #706 opened a year ago by thekswenson
  2

• Make it easier to have custom title and text on page

  #705 opened a year ago by yannickwurm
  0

• "Advanced parameters:" label in search interface should not be a hyperlink

  #695 opened a year ago by yannickwurm
  1

• Protein domains in protein queries

  #693 opened a year ago by yannickwurm
  2

• display issue in Safari 16.5.2 but not Chrome

  #701 opened a year ago by yannickwurm
  0

• Improve labels of titles in result page

  #698 opened a year ago by yannickwurm
  0

• Intercept badly formatted FASTA query

  #691 opened a year ago by yannickwurm
  0

• Update GH actions to use the latest version of BLAST

  #685 opened a year ago by tadast
  4

• The local sequenceserver can't work with version 2.1.0.

  #680 opened a year ago by Djangodu
  1

• docker build for 2.1.0 release fails

  #673 opened 2 years ago by nathanweeks
  2

• gh actions want js test to run automatically

  #667 opened 2 years ago by yannickwurm
  1

• closed

  #672 opened 2 years ago by wangc1106
  0

• sharing email text

  #651 opened 2 years ago by yannickwurm
  0

• RSpec testing wants to be robust to capybara flakiness

  #668 opened 2 years ago by yannickwurm
  0

• Improve coverage for recurring UI issues

  #655 opened 2 years ago by yannickwurm
  0

• Add R API & usage example

  #654 opened 2 years ago by yannickwurm
  0

• Results summary

  #659 opened 2 years ago by yannickwurm
  0

• Alignment download not necessarily happening

  #649 opened 2 years ago by yannickwurm
  1

• Unable to start container with port mapping

  #652 opened 2 years ago by jayramr
  1