Yannick Wurm research lab @ QMUL & Turing

Ants, bees, evolutionary genomics & bioinformatics.

Queen Mary University of London

Pinned Repositories

afra
Genome Annotation for the Masses
Language:JavaScript36 11 8621
Bter_neonicotinoid_exposure_experiment
Caste- and pesticide-specific effects of neonicotinoid pesticide exposure on gene expression in bumblebees
Language:R5 8 02
flo
Same species annotation lift over pipeline.
Language:Ruby89 16 4128
genevalidator
GeneValidator: Identify problems with predicted genes
Language:Ruby43 11 9918
genevalidatorapp
A web wrapper for GeneValidator
Language:JavaScript11 7 173
genomicscourse
For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
Language:HTML11 10 8319
oswitch
Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
Language:Ruby76 8 339
rubyscholar
Scrape Google Scholar Profile into a custom HTML using Ruby (Nokogiri)
Language:Ruby9 3 25
sequenceserver
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Language:JavaScript267 19 431112
wurmlab.github.io
Wurm lab website
Language:HTML7 16 6925

Yannick Wurm research lab @ QMUL & Turing's Repositories

wurmlab/sequenceserver
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Language:JavaScript267 19 431112
wurmlab/flo
Same species annotation lift over pipeline.
Language:Ruby89 16 4128
wurmlab/oswitch
Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
Language:Ruby76 8 339
wurmlab/genevalidator
GeneValidator: Identify problems with predicted genes
Language:Ruby43 11 9918
wurmlab/afra
Genome Annotation for the Masses
Language:JavaScript36 11 8621
wurmlab/genevalidatorapp
A web wrapper for GeneValidator
Language:JavaScript11 7 173
wurmlab/genomicscourse
For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
Language:HTML11 10 8319
wurmlab/rubyscholar
Scrape Google Scholar Profile into a custom HTML using Ruby (Nokogiri)
Language:Ruby9 3 25
wurmlab/NpSearch
NpSearch: Search for Neuropeptides
Language:Ruby7 6 11
wurmlab/wurmlab.github.io
Wurm lab website
Language:HTML7 16 6925
wurmlab/Bter_neonicotinoid_exposure_experiment
Caste- and pesticide-specific effects of neonicotinoid pesticide exposure on gene expression in bumblebees
Language:R5 8 02
wurmlab/CompareGenomeQualities
Reference free comparison of genome assemblies
Language:Shell5 4 1
wurmlab/QMUL-MSc-Programming-in-R-and-Using-Linux
Language:R4 5 94
wurmlab/SBC361-programming-in-R
QMUL's programming in R course
Language:CSS4 12 3511
wurmlab/bibtexJournalConverter
Converts bibtex .bib journal entries from long to short journal title and vice-versa. Can also remove '.' from abbreviated journal titles.
Language:Ruby3 5 3
wurmlab/tidbits
Language:Ruby3 3 2
wurmlab/Dockerfiles
Dockerfiles
Language:Shell2 4 03
wurmlab/templates
Templates for applications and reports.
Language:Makefile2 6 51
wurmlab/2019-11-allelic_bias_in_fire_ant_supergene
Language:HTML1 4 02
wurmlab/2021-fire-ant-social-supergene-introgression
Introgression events analysis of Solenopsis sp. supergene.
Language:Shell1 8 41
wurmlab/2022-amel_bter_expression_nachrs
Comparative expression analysis of nAChR subunit genes in Apis mellifera and Bombus terrestris
Language:Shell1 3 11
wurmlab/BioNano-Irys-tools
tools to work with BioNano Irys optical maps (cmaps)
Language:R1 5 0
wurmlab/Fire_ant_viral_load
Language:Shell1 2 0
wurmlab/genevalidatorappAPI
An API for GeneValidatorApp
Language:HTML1 7 9
wurmlab/cli-boot.camp
:computer: command-line bootcamp adventure in your browser
Language:JavaScript2 0
wurmlab/crowdCheckingTableOfContents
Language:R14 01
wurmlab/haplodiploid_simulations
SLiM simulations of haplodiploid populations
Language:HTML4 0
wurmlab/msc_assemblies
Language:HTML5 0
wurmlab/simulate_chromosome_length_evolution
Language:R5 01
wurmlab/to_allmaps
Scripts to use RADseq, RNAseq, and BioNano data with ALLMAPS for chromosomal scaffolding of genome assemblies.
Language:Perl4 0