wurmlab/genomicscourse

Issues

• www should not be movaeble

  #123 opened 2 months ago by yannickwurm
  0

• replace read end and quality trimming to use fastp

  #120 opened 9 months ago by yannickwurm
  2

• wording issue in test

  #119 opened a year ago by yannickwurm
  0

• we should replace mpileup

  #118 opened a year ago by yannickwurm
  0

• Practical gene prediction

  #117 opened a year ago by yannickwurm
  4

• `\` are confusing in the practicals.

  #116 opened a year ago by yannickwurm
  1

• CLI bootcamp display is crappy in some in-classroom web browsers

  #113 opened a year ago by yannickwurm
  0

• Advanced tools want to be installed on the command line bootcamp

  #112 opened a year ago by yannickwurm
  1

• CLI bootcamp - less vcf

  #114 opened a year ago by yannickwurm
  0

• Man cd command not working in command line bootcamp

  #111 opened a year ago by AlexisGGk
  0

• seqtk -L command description may be ambigous

  #110 opened 2 years ago by yannickwurm
  0

• ITS coordination

  #109 opened 2 years ago by yannickwurm
  0

• clean this up

  #108 opened 2 years ago by yannickwurm
  1

• Does pt 5 need to be cped to the other computers?

  #107 opened 2 years ago by yannickwurm
  1

• pt 4 mapping

  #106 opened 2 years ago by yannickwurm
  0

• prac1

  #105 opened 2 years ago by yannickwurm
  0

• Command line bootcamp issues

  #79 opened 4 years ago by yeban
  2

• Initial Testing

  #84 opened 2 years ago by yannickwurm
  9

• more informative messages

  #89 opened 2 years ago by yannickwurm
  3

• *** System restart required ***

  #90 opened 2 years ago by yannickwurm
  2

• Student Log In Issues

  #97 opened 2 years ago by RaphaellaJackson
  1

• SequenceServer and GeneValidator are very slow

  #94 opened 3 years ago by aswitwicka
  3

• GeneValidator wont work if many users try at the same time

  #99 opened 3 years ago by gabrielluishernandez
  1

• last practical

  #100 opened 3 years ago by yannickwurm
  1

• Practical 4 overuses inline code blocks

  #74 opened 2 years ago by yeban
  1

• strict read quality and end trimming leads to mispaired files

  #96 opened 3 years ago by yannickwurm
  2

• SPAdes didn't work

  #93 opened 3 years ago by gabrielluishernandez
  5

• Bootcamp comments

  #87 opened 3 years ago by gabrielluishernandez
  7

• Cannot Log In to Switch Server With New Log Ins

  #95 opened 3 years ago by RaphaellaJackson
  0

• Last practicals issues

  #80 opened 4 years ago by yannickwurm
  4

• broken link in Practical 3: Gene Prediction

  #85 opened 3 years ago by gabrielluishernandez
  1

• read-cleaning formating

  #92 opened 3 years ago by gabrielluishernandez
  1

• Nice Image for contribs

  #91 opened 3 years ago by yannickwurm
  0

• -- should add a step to say delete your .sam files! (or entire tmp folders)

  #88 opened 3 years ago by gabrielluishernandez
  3

• Assembly assignment

  #81 opened 4 years ago by yeban
  0

• prac 1

  #77 opened 4 years ago by yannickwurm
  1

• assembly puzzle

  #78 opened 4 years ago by yannickwurm
  1

• Practical 4 does not link to any software

  #73 opened 4 years ago by yeban
  0

• Prettier skin

  #72 opened 4 years ago by yannickwurm
  1

• Use long form command line options

  #71 opened 4 years ago by yeban
  0

• SPAdes on raw reads produces more contiguous assembly than cleaned reads

  #70 opened 4 years ago by yeban
  0

• Documentation improvement around FASTQC

  #67 opened 4 years ago by yeban
  0

• samtools pileup warning (practical 4)

  #63 opened 4 years ago by yeban
  0

• Regarding replacing SOAPdenovo

  #64 opened 4 years ago by yeban
  0

• Per-tile graph doesn't appear in FASTQC report

  #66 opened 4 years ago by yeban
  1

• readData fails in popgen practical

  #61 opened 4 years ago by yeban
  4

• GeneValidator (practical 3)

  #65 opened 4 years ago by yeban
  2

• samtools view is not required before samtools sort (practical 4)

  #62 opened 4 years ago by yeban
  1

• Update website link in repo to 2020 version

  #59 opened 4 years ago by yeban
  1

• singularities

  #58 opened 5 years ago by yannickwurm
  2