genomics-visualization
There are 160 repositories under genomics-visualization topic.
moshi4/pyCirclize
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
thackl/gggenomes
A grammar of graphics for comparative genomics
bernatgel/karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
moshi4/pyGenomeViz
A genome visualization python package for comparative genomics
wurmlab/sequenceserver
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
ucscGenomeBrowser/kent
UCSC Genome Browser source tree. Stable branch: "beta".
mixOmicsTeam/mixOmics
Development repository for the Bioconductor package 'mixOmics '
Zhong-Lab-UCSD/Genomic-Interactive-Visualization-Engine
Genomic Interactive Visualization Engine
stevekm/IGV-snapshot-automator
Script to automatically create and run IGV snapshot batchscripts
brentp/jigv
igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
bigomics/omicsplayground
Visual self-service analytics platform for big omics data.
CDCgov/MicrobeTrace
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
RCollins13/HumanIdiogramLibrary
Resource of human chromosome schematics & images
robotoD/GenoVi
GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
arvkevi/ezancestry
Easy genetic ancestry predictions in Python
thierrygosselin/radiator
RADseq Data Exploration, Manipulation and Visualization using R
brwnj/covviz
Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
daler/trackhub
create, manage, and upload track hubs for use in the UCSC genome browser
brentp/seqcover
seqcover allows users to view coverage for hundreds of genes and dozens of samples
LyonsLab/coge
CoGe (Comparative Genomics) Platform
moshi4/MGCplotter
Microbial Genome Circular plotting tool for comparative genomics using Circos
gtrichard/deepStats
deepStats: a stastitical toolbox for deeptools and genomic signals
euxhenh/cellar
Interactive software tool for the assignment of cell types in single-cell studies.
G3viz/g3viz
Lollipop-diagram to interactively visualize genetic mutations
thierrygosselin/stackr
stackr: an R package to run stacks software pipeline
hw538/cfDNAPro
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
GMOD/jbrowse-jupyter
A python package for showing JBrowse views
tobiasrausch/vc
A tutorial on structural variant calling for short read sequencing data
moshi4/plot_genome_align_fig
Plot genome alignment figure using progressiveMauve & genoPlotR
nf-core/hgtseq
A pipeline to investigate horizontal gene transfer from NGS data
moshi4/GBKviz
Easy-to-use web application for visualization and comparison of genomes in Genbank file
outbreak-info/R-outbreak-info
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
s1monj/nft-peppers
Generative Art NFTs from Genomic Data
Binomica-Labs/BLSS
A suite of unique bioinformatics tools for the brave explorer.
G3viz/g3lollipop.js
Lollipop-diagram to visualize genomic mutations
w-gao/pgv
A web-based, interactive pangenome visualization tool