stevekm/IGV-snapshot-automator

Issues

• Instructions to get this working in cluster without X11

  #9 opened 5 years ago by ManavalanG
  4

• The figure are small

  #5 opened 3 years ago by simoncchu
  11

• How to input the region in region.bed file if it lies between 2 chromosomes?

  #30 opened 2 years ago by satyakam001
  0

• How to add the center line in the middle of the picture in the test

  #29 opened 2 years ago by zxclovezby
  0

• testing run is not working

  #27 opened 2 years ago by yinshiyi
  5

• Only output IGV_snapshots.bat without *png

  #24 opened 2 years ago by zhangzhiyangcs
  2

• replace xvfb on Mac

  #28 opened 2 years ago by YueWenbo
  1

• Snapshot on Pacbio hifi reads bam file

  #26 opened 3 years ago by wenluo711
  3

• color the positive and negative strand

  #14 opened 5 years ago by beancoco
  5

• invalid literal for int() with base 10 error

  #21 opened 4 years ago by kaanokay
  3

• .Genome file input

  #20 opened 3 years ago by jeffwongdmx
  6

• Trying to run on a Mac

  #25 opened 3 years ago by afarahani951
  2

• Load Bam files from URL

  #22 opened 3 years ago by angelussong
  2

• count details of the region/locus of interest

  #23 opened 3 years ago by umirshahi1
  2

• Need to update containers to include the repo source code

  #16 opened 4 years ago by stevekm
  0

• Fix the default path to IGV .jar file

  #18 opened 4 years ago by stevekm
  0

• Add Docker container

  #17 opened 4 years ago by stevekm
  0

• an "hs_err_pid22398.log" produced

  #15 opened 4 years ago by chen318liang
  2

• HI

  #13 opened 5 years ago by solivehong
  1

• Different outputs

  #12 opened 6 years ago by maktolun
  2

• Softclipped regions

  #8 opened 6 years ago by valipourm
  1

• showing number of reads supporting each allele

  #10 opened 6 years ago by vsvinti
  1

• Possible to sort by base?

  #11 opened 6 years ago by iskandr
  1

• IGV download URL needs an update

  #6 opened 7 years ago by Niknafs
  1

• need support for BED file with extra columns

  #4 opened 8 years ago by stevekm
  0

• need to check for bai's

  #3 opened 8 years ago by stevekm
  0

• Genome should be loaded before loading BAM files

  #2 opened 8 years ago by scchess
  1

• Unable to change genome

  #1 opened 8 years ago by scchess
  2