Pinned Repositories
2016-01-18-training-prep
BeatsonLab-MicrobialGenomics.github.io
Lab Website
bz_massarray_convert
Tool to convert massarray data given a set of rules.
courses
fast.ai Courses
DistanceDistributionAnalysis
R scripts dedicated to the statistical analysis of distribution of distances using various graphical representations and non-parametric tests.
Klebsiella_antibiotics_paper
MIC_to_SIR_converter
phage-kitchen
Repository of bioinformatics tools, pipelines, recipes and more, with a focus on bacteriophages.
toolbox
Collection of small utility scripts
nbenzakour's Repositories
nbenzakour/phage-kitchen
Repository of bioinformatics tools, pipelines, recipes and more, with a focus on bacteriophages.
nbenzakour/toolbox
Collection of small utility scripts
nbenzakour/2016-01-18-training-prep
nbenzakour/BeatsonLab-MicrobialGenomics.github.io
Lab Website
nbenzakour/bz_massarray_convert
Tool to convert massarray data given a set of rules.
nbenzakour/courses
fast.ai Courses
nbenzakour/DistanceDistributionAnalysis
R scripts dedicated to the statistical analysis of distribution of distances using various graphical representations and non-parametric tests.
nbenzakour/Klebsiella_antibiotics_paper
nbenzakour/MIC_to_SIR_converter
nbenzakour/docker-cheat-sheet
Docker Cheat Sheet
nbenzakour/gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
nbenzakour/ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.
nbenzakour/minion_qc
An R script to do some QC on MinION data
nbenzakour/mutpath
Map mutational paths through protein sequence space
nbenzakour/nullarbor-1
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
nbenzakour/oneliners
Useful bash one-liners for bioinformatics.
nbenzakour/PHAGPCR
A small pipeline to design PCR primers for phage sequences
nbenzakour/PhyloCanvas
Phylogenetic tree visualisation for the web.
nbenzakour/Practical1
Python programming
nbenzakour/qqman
R code for creating Manhattan plots and Q-Q plots for GWAS
nbenzakour/SeqFindR
A tool to easily create informative genomic feature plots
nbenzakour/Sequence-manipulation
A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats
nbenzakour/snp-parser
SImple script to parse SNPs
nbenzakour/speciesprimer
The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
nbenzakour/speciesprimerdeps
Dependencies for Docker baseimage for SpeciesPrimer
nbenzakour/tidytuesday
Repo for initial setup of the #tidytuesday visualization project