rmormando
A bioinformatician working with a variety of organisms while utilizing a strong computational background to contribute to the field.
Pinned Repositories
purge_dups
haplotypic duplication identification tool
cnvkit
Copy number variant detection from targeted DNA sequencing
kmer-db
Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
MiniProject_RitaMormando
PhyloTree_Project
A bioinformatics pipeline for microbiome data analysis using phylogenetic trees
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
whatshap
Read-based phasing of genomic variants, also called haplotype assembly
rmormando's Repositories
rmormando/ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
rmormando/MiniProject_RitaMormando
rmormando/PhyloTree_Project
A bioinformatics pipeline for microbiome data analysis using phylogenetic trees