Pinned Repositories
2018-CS109A
Repository for CS109A Fall 2018
2019_Aug_ML_ensemble
Material for the workshop on ML ensemble methods using caret and shiny by Valeria Fonseca Diaz on 6th of August 2019.
AdaBound-Tensorflow
Simple Tensorflow implementation of "Adaptive Gradient Methods with Dynamic Bound of Learning Rate" (ICLR 2019)
AdaBound-tensorflow-1
An optimizer that trains as fast as Adam and as good as SGD in Tensorflow
bash_functions
Functions I keep in my .bash files. Usually written badly by myself (to handle only very specific cases) or also possibly stolen off the internetz
BGCs_in_rare_metagenomic_DNA
bigscape
Biosynthetic Genes Similarity Clustering and Prospecting Engine. Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)
bioinfo-tools
Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
coinfinder
A tool for the identification of coincident (associating and dissociating) genes in pangenomes.
conkat_seq
bioinfo-fiend's Repositories
bioinfo-fiend/2018-CS109A
Repository for CS109A Fall 2018
bioinfo-fiend/2019_Aug_ML_ensemble
Material for the workshop on ML ensemble methods using caret and shiny by Valeria Fonseca Diaz on 6th of August 2019.
bioinfo-fiend/AdaBound-Tensorflow
Simple Tensorflow implementation of "Adaptive Gradient Methods with Dynamic Bound of Learning Rate" (ICLR 2019)
bioinfo-fiend/AdaBound-tensorflow-1
An optimizer that trains as fast as Adam and as good as SGD in Tensorflow
bioinfo-fiend/bash_functions
Functions I keep in my .bash files. Usually written badly by myself (to handle only very specific cases) or also possibly stolen off the internetz
bioinfo-fiend/BGCs_in_rare_metagenomic_DNA
bioinfo-fiend/bigscape
Biosynthetic Genes Similarity Clustering and Prospecting Engine. Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)
bioinfo-fiend/bioinfo-tools
Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
bioinfo-fiend/coinfinder
A tool for the identification of coincident (associating and dissociating) genes in pangenomes.
bioinfo-fiend/conkat_seq
bioinfo-fiend/containers-workshop
Materials for the workshop on containers
bioinfo-fiend/corason
Bioinformatic Tools for study Evolution of metabolic diversity
bioinfo-fiend/CP_Framework
Revision of Conformal Predictions Framework
bioinfo-fiend/education
Materials for my lectures and for self-study in machine learning
bioinfo-fiend/evomining
bioinfo-fiend/github-slideshow
A robot powered training repository :robot:
bioinfo-fiend/hands-on-transfer-learning-with-python
Deep learning simplified by transferring prior learning using the Python deep learning ecosystem
bioinfo-fiend/keras-adabound
AdaBound optimizer in Keras
bioinfo-fiend/keras-resources
Directory of tutorials and open-source code repositories for working with Keras, the Python deep learning library
bioinfo-fiend/learn-wdl
Educational materials for learning WDL
bioinfo-fiend/machine-learning
bioinfo-fiend/Machine-Learning-Collection
PyTorch Tutorials, TensorFlow Tutorials and Machine Learning Algorithms
bioinfo-fiend/markdown-cheatsheet
Markdown Cheatsheet for Github Readme.md
bioinfo-fiend/ngboost
Natural Gradient Boosting for Probabilistic Prediction
bioinfo-fiend/Prodigal
Prodigal Gene Prediction Software
bioinfo-fiend/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
bioinfo-fiend/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
bioinfo-fiend/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
bioinfo-fiend/tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
bioinfo-fiend/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly