seppinho
Computational Biologist @genepi https://genepi.i-med.ac.at/team/seb/
Medical University of InnsbruckInnsbruck, Austria
Pinned Repositories
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
cayman
Cayman is a Jekyll theme for GitHub Pages
cloudgene-apps-docker
Available Docker Apps for the Hadoop Workflow System Cloudgene
cloudgene-boilerplates
a collection of cloudgene boilerplates
cloudgene-docker
Hadoop Workflow System on Docker (http://cloudgene.uibk.ac.at)
cloudgene-yarn-docker
Cloudgene +YARN + Docker
haplogrep-cmd
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
mutserve
mtDNA Variant Caller
nft-vcf
nf-test plugin to provide support for VCF files.
scripts
bash scripts and other stuff I always google
seppinho's Repositories
seppinho/haplogrep-cmd
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
seppinho/mutserve
mtDNA Variant Caller
seppinho/scripts
bash scripts and other stuff I always google
seppinho/cloudgene-docker
Hadoop Workflow System on Docker (http://cloudgene.uibk.ac.at)
seppinho/nft-vcf
nf-test plugin to provide support for VCF files.
seppinho/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
seppinho/cayman
Cayman is a Jekyll theme for GitHub Pages
seppinho/cloudgene-apps-docker
Available Docker Apps for the Hadoop Workflow System Cloudgene
seppinho/cloudgene-boilerplates
a collection of cloudgene boilerplates
seppinho/cloudgene-yarn-docker
Cloudgene +YARN + Docker
seppinho/connectors-workspace-one
Sample Connectors for VMware Workspace ONE Mobile Flows
seppinho/ember-file-upload
HTML5 file uploads for Ember apps
seppinho/ember-highcharts
A Highcharts, HighStock and HighMaps component for ember cli
seppinho/ember-light-table
Lightweight, contextual component based table for Ember 2.3+
seppinho/ember-paper-stepper
Step up your app with material steppers.
seppinho/hadoop-101
Hadoop and Cloudgene for Beginners
seppinho/Hadoop-BAM
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
seppinho/iECAT
Integrating external controls into association test
seppinho/imputation-panels
Create reference panels for Michigan Imputation Server
seppinho/just-the-docs
A modern, high customizable, responsive Jekyll theme for documention with built-in search.
seppinho/lukfor.github.io
forer.it website using jekyll
seppinho/lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
seppinho/magic-reports
A java library to generate beautiful html reports
seppinho/nf-gwas
A nextflow pipeline to perform genome-wide association studies using regenie.
seppinho/nf-test-plugin-example
A nf-test example
seppinho/r21x_analysis
seppinho/regenie
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
seppinho/seppinho.github.io
my personal website using Jekyll - seppinho.github.io
seppinho/systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
seppinho/test
safsa