seppinho

seppinho's Stars

• nektos/act

  Run your GitHub Actions locally 🚀

  Language:Go54.3k1651.1k1.4k

• instillai/TensorFlow-Course

  :satellite: Simple and ready-to-use tutorials for TensorFlow

  Language:Jupyter Notebook16.4k806123.2k

• PrefectHQ/prefect

  Prefect is a workflow orchestration framework for building resilient data pipelines in Python.

  Language:Python16k1635.5k1.6k

• johnkerl/miller

  Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON

  Language:Go8.9k70655215

• facebookarchive/caffe2

  Caffe2 is a lightweight, modular, and scalable deep learning framework.

  Language:Shell8.4k5281.3k1.9k

• deepjavalibrary/djl

  An Engine-Agnostic Deep Learning Framework in Java

  Language:Java4.1k105846650

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.2k156824721

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.7k873.2k621

• posit-dev/positron

  Positron, a next-generation data science IDE

  Language:TypeScript2.5k272.8k77

• deeplearning4j/deeplearning4j-examples

  Deeplearning4j Examples (DL4J, DL4J Spark, DataVec)

  Language:Java2.4k2135371.8k

• bbc/bbplot

  R package that helps create and export ggplot2 charts in the style used by the BBC News data team

  Language:R1.6k10618266

• samtools/htslib

  C library for high-throughput sequencing data formats

  Language:C80462713446

• austrianredcross/stopp-corona-android

  Android Source Code

  Language:Kotlin272257155

• csbl-br/awesome-compbio-chatgpt

  An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology

  25111025

• rgcgithub/regenie

  regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

  Language:C++1831153953

• wilzbach/msa

  Modular BioJS compoment for a multiple sequence alignment

  Language:JavaScript1681719579

• askimed/nf-test

  Simple test framework for Nextflow pipelines

  Language:Java137717021

• citiususc/veryfasttree

  Efficient phylogenetic tree inference for massive taxonomic datasets

  Language:C++10912235

• genepi/nf-gwas

  A nextflow pipeline to perform state-of-the-art genome-wide association studies.

  Language:Nextflow6273421

• nextflow-io/nf-validation

  Params validation plugin for Nextflow pipelines

  Language:Groovy4855121

• KCCG/mity

  mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

  Language:Python364273

• statgen/savvy

  Interface to various variant calling formats.

  Language:C++268305

• 1kg-ont-vienna/sv-analysis

  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel

  Language:Python23510

• chen0040/java-clustering

  Package provides java implementation of various clustering algorithms

  Language:Java11506

• yukt/MetaMinimac2

  Language:C++11184

• cbcrg/nf-phdcourse19

  Nextflow training material for CRG PhD course 2019

  Language:Nextflow105057

• lukfor/imputationbot

  Automate interactions with the imputation servers :robot:

  Language:Java62206

• kehrlab/bcctools

  Correcting barcodes in 10X linked-read sequencing data.

  Language:C++4323

• gevro/Mitochondria-Pipeline

  MitochondriaPipeline

  Language:WDL2100

• TheoCavinato/RESHAPE

  Language:C++230