Institute of Genetic Epidemiology

Medical University of Innsbruck

Innsbruck, Austria

Pinned Repositories

cdh5-hadoop-mrv1
Docker Image for Cloudera Hadoop MapReduce (MRv1)
Language:Shell1 3 12
cloudgene
A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
Language:Java35 4 2719
cloudgene-docker
Docker Image for Cloudgene
Language:HTML1 5 32
cloudgene-examples
Example applications to start with Cloudgene
Language:HTML1 3 00
cloudgene-old
Please note that this repository is deprecated. Please use genepi/cloudgene
Language:JavaScript10 8 45
haplocheck
Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies
Language:HTML16 8 142
haplogrep3
Free mtDNA Haplogroup Classification Service
Language:Java18 5 101
imputationserver
Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
Language:Java73 13 8341
imputationserver-docker
Docker Image for Michigan Imputation Server
Language:Dockerfile17 8 1813
nf-gwas
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
Language:Nextflow59 7 3320

Institute of Genetic Epidemiology's Repositories

genepi/imputationserver
Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
Language:Java73 13 8341
genepi/nf-gwas
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
Language:Nextflow59 7 3320
genepi/cloudgene
A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
Language:Java35 4 2719
genepi/haplogrep3
Free mtDNA Haplogroup Classification Service
Language:Java18 5 101
genepi/haplocheck
Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies
Language:HTML16 8 142
genepi/mtdna-server-2
mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes
Language:Nextflow5 4 8
genepi/imputationserver-aws
Running Michigan Imputation Server (MIS) on AWS EMR
Language:Shell3 7 02
genepi/phylotree-fu-rcrs
Language:HTML2
genepi/phylotree-rcrs-17
Language:HTML2 1 0
genepi/umi-pipeline-nf
Nextflow pipeline to analyze ONT UMI Sequencing data
Language:Python2 3 91
genepi/genepi-libs
Genepi Libraries
Language:Java1 5 23
genepi/genomic-utils
Collection of tools to work with genomic datasets
Language:Java1 4 21
genepi/mitoverse
Documentation for the Mitoverse Platform
Language:HTML1 5 0
genepi/ngs-class
Next Gen Sequencing Course - Medical University of Innsbruck
Language:Nextflow1 2 0
genepi/cloudgene-installer
Cloudgene Installation script.
Language:Shell3 01
genepi/cloudgene-sdk
SDKs for Cloudgene
Language:Java4 0
genepi/haplogrep-core
haplogrep-core
Language:Java6 1
genepi/haplogrep-trees
Language:HTML4 0
genepi/imputation-docker
Language:Dockerfile4 0
genepi/imputationserver-ashg
Michigan Imputation Server Workshop
Language:HTML
genepi/imputationserver-ashg22
Michigan Imputation Server Workshop @ ASHG 22 - Genetics and Genomics Digital Forum
2 0
genepi/imputationserver-utils
Language:Java
genepi/mt-c1
Functionally relevant mutation sites in the human mitochondrial respiratory complex 1 (MT-C1)
Language:HTML5 0
genepi/nextflow-101
A simple Nextflow pipeline to demonstrate basic features
Language:Nextflow4 0
genepi/phylotree-rcrs-15
Language:Makefile4 0
genepi/phylotree-rcrs-16
Language:Makefile4 0
genepi/phylotree-rsrs-17
Language:Makefile4 0
genepi/pre-imputation-qc
Prepare your data for Genotype Imputation
Language:Nextflow
genepi/r-repo-test
A R test repo
3 0
genepi/vntr-calling-nf
Language:HTML3 01