genepi/imputationserver
Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
JavaAGPL-3.0
Issues
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update information about reference panel
#144 opened by hanruijiang - 2
Calculating QC Statistics failed.
#103 opened by alkaZeltser - 0
Uninformative Upload Progress Bar
#143 opened by DarioS - 1
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rsq Filter Limited Choice
#142 opened by DarioS - 0
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Post-imputation frequency plot
#140 opened by rskl92 - 0
- 2
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Allelle swap QC misses some counters
#137 opened by abought - 0
ChrX nonPAR region includes ambiguous samples
#136 opened by swvanderlaan - 0
How are multiallelic sites handled?
#133 opened by alkaZeltser - 3
Incorrect job log path
#129 opened by mamanambiya - 1
Imputation failed due to strand flip errors
#131 opened by ebrigos - 0
400 Error during input parameter parsing
#116 opened by LeeDarian - 0
Internal Server Error
#115 opened by LeeDarian - 0
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Chromosome X imputation problem!
#125 opened by boseb - 0
Original Variant Identifiers Are Destroyed
#120 opened by DarioS - 0
No Variant is TYPED_ONLY
#119 opened by DarioS - 0
rsq Filter Choices Justification
#118 opened by DarioS - 0
A lot of variants site have no variations
#113 opened by Yuling192 - 0
show fail logs
#112 opened by mfazel - 3
Input genotypes are expect to come from array genotypes with no more than 20000 SNPs expected per chunk.
#70 opened by bk11-lab - 0
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construct HLA imputation server
#110 opened by ksmpooh - 0
How to disable low call rate exclusion?
#109 opened by scpv - 3
- 2
- 1
Unable to upload more than 1 file via sftp
#96 opened by theandyb - 0
Imputation vs TOPMED data using API?
#95 opened by federicosq85 - 0
Imputation failing with multiple chromosomes
#94 opened by mehshad - 5
question about reference genome
#92 opened by aheritas - 1
typed only sitets
#55 opened by hyl317 - 1
Auto generated password doesn't get displayed properly because of HTML reserved character
#58 opened by nabito - 0
Imported new panel, imputation fails on QC
#74 opened by shakeeljessa - 1
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Imputation quality score (rsq_hat)
#76 opened by glettre - 0
AWS/S3 limited to us-east-1
#84 opened by quattro - 0
Specify job name in API command
#88 opened by teng-gao - 0
- 1
Jobs do not start
#64 opened by nickhir - 1
Imputation of Chromosome X - Execution failed without specific error message
#66 opened by maltose1117 - 6
Imputation X-chromosome
#63 opened by davanderp - 1
API documentation lacks download example
#61 opened by avsmith - 0
Can the server return rsid?
#59 opened by xsun1229 - 2