Issues
- 0
Number of ignored tests due to low MAC == 0
#531 opened by akhilpampana - 0
Genotyped data for step 1>1M variants
#530 opened by chirrie - 0
Question about using phenotype files for different populations in two steps
#529 opened by xiashuting - 0
covariance of interaction and snp terms
#528 opened by Julie-LB - 0
Question about prediction in Step 1
#526 opened by Youpu-Chen - 5
Product suggestion: SNP has low variance error
#487 opened by rdey-insitro - 2
- 0
Does Regenie implement internal variant filtering for building mask in rare variant burden testing?
#525 opened by afroz2511 - 2
Fraction of genes have no gene_p results
#518 opened by Mathias0077 - 2
ERROR: vector::_M_default_append
#516 opened by PreciousEunice - 0
Document output format for region-based regenie step 2
#524 opened by dvg-p4 - 4
genebase
#517 opened by Graph-kernel - 1
Feature request: E-value statistics
#519 opened by jerome-f - 2
- 7
Interaction test to output ADD-INT_SNPxVAR result
#514 opened by tomoconaka - 4
Testing for interaction in gene-based test
#508 opened by ape4fld - 1
incorrectly formatted phenotype file.
#512 opened by LucasNakach - 2
- 5
Is it possible to compute LD between two masks?
#496 opened by scienception - 3
- 1
empty output file
#522 opened by lcmajara - 1
DF column in the burden test
#521 opened by jerome-f - 1
Consideration of multi-collinearity in covariates
#523 opened by viva1109 - 1
Can the annotation file contain more than one annotation for same variant?
#520 opened by scienception - 4
Truncated Output
#494 opened by hsmith9002 - 0
Trying to download gz.sif file
#513 opened by xuxiny17 - 0
incorrectly formatted phenotype file.
#511 opened by LucasNakach - 2
feature request: select a range of phenotypes
#499 opened by yuchang-wu - 1
Robust SE when conducting interaction studies: the impact of phenotype scaling? --force-robust undocumented?
#501 opened by Ojami - 3
- 7
Question on plink files
#489 opened by scienception - 1
Hail Implementation of Regenie Burden Testing
#498 opened by GHawkes93 - 1
Feature request: dominance deviation testing and improved recessive+dominance tests
#500 opened by samuelejones - 2
Does REGENIE step 1 require independent SNPs?
#497 opened by cs16436 - 2
not enough variants
#505 opened by vanessapitz - 1
--ref-first for pgen pvar psam files
#506 opened by uelandte - 1
- 4
How to deal with INFO score for chromosome X?
#504 opened by nandobonf - 0
regenie step 1 :ERROR
#502 opened by Wyz19998 - 0
ERROR: no set left to include in analysis.
#495 opened by nikotzoumas - 2
Unable to run regenie with Genomics England imputed genotypes on the UKB-RAP platform
#491 opened by kauralasoo - 2
Genotype going to -nan or nan
#483 opened by jerome-f - 1
Regenie rejects valid pvar files
#492 opened by Wainberg - 7
regenie produces slightly different output depending on the number of phenotypes processed jointly
#486 opened by hguturu - 1
Covariates that are exclusive to step 1 or step 2
#490 opened by nshrine - 1
question about burden test
#488 opened by wzdxbf - 1
regenie: error while loading shared libraries: libzstd.so.1: cannot open shared object file: No such file or directory
#485 opened by wushishi544 - 1
- 1
mitochondrial genome-wide association studies
#482 opened by cute-mints - 2
PgrGet() error in regenie step 2
#481 opened by dianacornejo