Pinned Repositories
23andme-to-vcf
A command line utility to convert 23andme raw data files to VCF format
4DVOUS
Genomic regions annotation using 4D Genome data
aberrant
Aberrant R package from https://www.well.ox.ac.uk/~spencer/Aberrant/
bamdst
a lightweight bam file depth statistical tool
computational.biology
quick Manhattan plot app
gassocplot2
Second version of gassocplot: a regional association plotter for genetic and epigenetic data
GREP
GREP: Genome for REPositioning drugs
GWASdb
fast query of gwas result stored in sql
icarus
Species identification and resistance genes mapping from ONT long reads
nandobonf's Repositories
nandobonf/icarus
Species identification and resistance genes mapping from ONT long reads
nandobonf/23andme-to-vcf
A command line utility to convert 23andme raw data files to VCF format
nandobonf/4DVOUS
Genomic regions annotation using 4D Genome data
nandobonf/aberrant
Aberrant R package from https://www.well.ox.ac.uk/~spencer/Aberrant/
nandobonf/bamdst
a lightweight bam file depth statistical tool
nandobonf/computational.biology
quick Manhattan plot app
nandobonf/gassocplot2
Second version of gassocplot: a regional association plotter for genetic and epigenetic data
nandobonf/GREP
GREP: Genome for REPositioning drugs
nandobonf/GWASdb
fast query of gwas result stored in sql
nandobonf/impute-me
This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation
nandobonf/M3C
Monte Carlo Reference-based Consensus Clustering
nandobonf/MungeSumstats
Rapid standardisation and quality control of summary statistics from GWAS
nandobonf/N2V-HC
nandobonf/nandobonf.github.io
nandobonf/nf-bam2fastq
Nextflow-based BAM-to-FASTQ conversion and FASTQ-sorting workflow.
nandobonf/ngspipe
pipeline for analysis of NGS data
nandobonf/Pathifier-Tool-Kit
Scripts that may help you use PATHIFIER (Drier et al., 2013)
nandobonf/PCAmatchR
A flexible R package for weighted principal component case control matching
nandobonf/RACER
An R package for generating comparative regional association plots
nandobonf/SE-MEI
Tools for finding mobile element insertions from single-end datasets
nandobonf/signatureSearch
R/Bioconductor package including the Gene Expression Signature Search (GESS), Function Enrichment Analysis (FEA) methods and supporting drug-target network construction for visualization
nandobonf/snpsettest
A set-based association test using GWAS summary statistics
nandobonf/somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
nandobonf/STAR_protocols_core_modules
Code accompanying STAR protocols publication describing the identification of core modules in a co-expression network using GWAS data
nandobonf/unicorn-qc
nandobonf/variants_in_homopolymer_regions
nandobonf/wecall
Fast, accurate and simple to use command line tool for variant detection in NGS data.