nandobonf/23andme-to-vcf

A command line utility to convert 23andme raw data files to VCF format

23andme to VCF

A simple command-line tool to convert 23andMe raw data files to VCF format.

Install

pip install 23andme-to-vcf

Usage

23andme-to-vcf --input in.txt --fasta GRCh37.fa --fai GRCh37.fa.fai --output out.vcf

Alternatively, run the public docker image davidwb/23andme-to-vcf which already contains the reference and fasta index:

docker run -v `pwd`:/app/data davidwb/23andme-to-vcf --input genome_David_Brown_v4_Full_20180518133503.txt --output david_23andme.vcf