incorrectly formatted phenotype file.

[LucasNakach]

Hi everyone, I'm doing a new GWAS using regenie as usual, using the same script and a phenotype file strictly similar to all the other ones I ever used or so I think. Despite that regenie gives me an error in step 1: error: incorrectly formatted phenotype file.

Here are both bin from a success GWAS using the exact same script , and both phenotype files also. I'd anyone knows why this appears I'd be very grateful

Lucas.

[joellembatchou]

Hi Lucas,

I think the error points to an uneven number of fields across the lines in your phenotype file. Can you include the output of awk '{print NF}' newpheno.ped | sort -u?

Thank you,
Joelle