seppinho/mutserve

Issues

• Full documentation link broken

  #50 opened a year ago by yunhua1031
  1

• Navie question: Can I use this for Mouse mitochondrial varaint discovery?

  #51 opened a year ago by MitoSri
  1

• Heteroplasmy Detection Issue for Variants Present in Excess of 90%

  #49 opened a year ago by BarbaraSlap
  1

• ONT sequences

  #48 opened 2 years ago by malcom23
  0

• java.lang.IllegalArgumentException: Invalid reference index -1

  #47 opened 2 years ago by ianaebutler
  3

• Mutserve call does not work with CRAM file

  #45 opened 3 years ago by dana-obk
  0

• Example data output incorrect?

  #44 opened 3 years ago by kc199
  8

• java.lang.IllegalArgumentException: Invalid reference index -1

  #43 opened 3 years ago by thesnakeguy
  1

• SE Alignment does not give flags back

  #17 opened 4 years ago by seppinho
  0

• line break in raw.txt file

  #39 opened 4 years ago by haansi
  1

• VCF file with static reference chrM 16569

  #41 opened 4 years ago by haansi
  1

• Coverage FWD / REV in variant file

  #38 opened 4 years ago by haansi
  1

• htsjdk.samtools.SAMException: Unable to find entry for contig: rCRS

  #33 opened 4 years ago by Jiafeng-Li-leon
  1

• `htsjdk.samtools.SAMException: Unable to find entry for contig: rCRS`

  #24 opened 6 years ago by williamrowell
  5

• Output variants in VCF

  #19 opened 6 years ago by seppinho
  10

• Exception raise up Allele in genotype

  #32 opened 5 years ago by shichenhai2020
  0

• Problem raised up when I tried to call indels.

  #31 opened 5 years ago by wulingyu1028
  0

• Indels in VCF

  #27 opened 6 years ago by haansi
  1

• Java Memory Exception

  #28 opened 6 years ago by jdpleiness
  1

• Java error message when using own data

  #26 opened 6 years ago by melnel000
  4

• Mixture-Mode

  #25 opened 6 years ago by haansi
  1

• Mode for Precision ID

  #23 opened 6 years ago by haansi
  0

• Move BaseAnnotation to genepi-annotate

  #22 opened 7 years ago by seppinho
  0

• Build failure with 'mvn install'

  #20 opened 7 years ago by jpt1016
  1

• adapt screenshots in help page

  #9 opened 7 years ago by scogi
  0

• Integrate a button to download all results file of a job in one click

  #10 opened 7 years ago by scogi
  1

• report.html

  #16 opened 7 years ago by scogi
  0

• Help Page Adaption

  #4 opened 7 years ago by scogi
  1

• Problem with CRAM references and AnySamImportFormat

  #2 opened 7 years ago by seppinho
  0

• Naming of jobs

  #7 opened 7 years ago by scogi
  2

• remove rCRS from references

  #8 opened 7 years ago by scogi
  0

• Add user-defined upload for reference sequence+locus annotation file

  #13 opened 7 years ago by scogi
  0

• Create Testcases for Heteroplasmy level

  #15 opened 7 years ago by seppinho
  0

• Replace variants.txt with annotate_out.txt and rename?

  #12 opened 8 years ago by scogi
  1

• AAS annotation currently wrong

  #11 opened 8 years ago by scogi
  0

• Add Data Validator

  #1 opened 8 years ago by seppinho
  0

• Paired end validation

  #3 opened 8 years ago by scogi
  2

• Stats.txt file: Info what the numbers are

  #14 opened 8 years ago by scogi
  0

• Contact page

  #5 opened 8 years ago by scogi
  1

• Share data buttons

  #6 opened 8 years ago by scogi
  1