williamrowell
Bioinformatics scientist & 1x programmer on a good day. Comp Bio @PacificBiosciences.
@PacificBiosciencesDurham, NC, US
Pinned Repositories
miniwdl-slurm
HiFi-human-WGS-WDL
wdl-common
wdl-dockerfiles
bfx-cheatsheets
Cheatsheets for my commonly used bioinformatics tasks
drosophila_activity_analysis
Tools for (relatively) quickly analyzing screen data collected with Trikinetics DAM system
hifi-deepvariant-snakemake
markdup
Reference-based PCR duplicate detection from PacBio sequences.
srWGS-deepvariant-happy-snakemake
williamrowell's Repositories
williamrowell/hifi-deepvariant-snakemake
williamrowell/srWGS-deepvariant-happy-snakemake
williamrowell/bfx-cheatsheets
Cheatsheets for my commonly used bioinformatics tasks
williamrowell/markdup
Reference-based PCR duplicate detection from PacBio sequences.
williamrowell/miniwdl-grid
williamrowell/python-mastery
Advanced Python Mastery (course by @dabeaz)
williamrowell/solve_graph
Parsimonious solutions to complex rearrangements for fun
williamrowell/awesome-uses
A list of /uses pages detailing developer setups, gear, software and configs.
williamrowell/bfx_helpers
A junk drawer of one-off scripts that don't deserve their own repo yet.
williamrowell/bioinformatics-workbook
Bioinformatics Workbook repository
williamrowell/core
:house_with_garden: Open source home automation that puts local control and privacy first.
williamrowell/coriell_lookup
Lookup information about cells or DNA available from Coriell. Completely vibe-coded, so please don't come at me.
williamrowell/gh-cms
Headless CMS using Github Issues and Github Actions
williamrowell/hugo-devresume-theme
A free resume/CV template made for software developers.
williamrowell/kinefly_tools
williamrowell/life-in-weeks
📍 A map of my life, where each week I've been alive is a little box.
williamrowell/Long-reads-Sequencing-of-SNCA-in-Diseases
Scripts accompanying Tseng E, Rowell WJ, Glenn O-C, Hon T, Barrera J, Kujawa S and Chiba-Falek O (2019) The Landscape of SNCA Transcripts Across Synucleinopathies: New Insights From Long Reads Sequencing Analysis. Front. Genet. 10:584. doi: 10.3389/fgene.2019.00584
williamrowell/markdown-cv
a simple template to write your CV in a readable markdown file and use CSS to publish/print it.
williamrowell/miniwdl
Workflow Description Language developer tools & local runner
williamrowell/miniwdl-slurm
williamrowell/noteplan-plugins
The main NotePlan repository, which contains the source code for all NotePlan plugins. If a release entry has been created, it will be available for installation from within NotePlan application.
williamrowell/numi_extensions
Useful extensions for Numi calculator. https://github.com/nikolaeu/Numi https://numi.app/
williamrowell/pcalc-functions
User-defined functions for PCalc.
williamrowell/python-open-source-template
A template for open-source Python software repositories
williamrowell/understanding-pytest-workflow
williamrowell/vial-qmk-piantor
williamrowell/wdl-aid
Automatic Input Documentation for WDL workflows
williamrowell/wdl-ci
Tools to validate and test WDL-based repositories. To be used as part of CI/CD pipelines
williamrowell/wdl_playground
This is just a place for me to debug and test WDL syntax.
williamrowell/williamrowell