seppinho
Computational Biologist @genepi https://genepi.i-med.ac.at/team/seb/
Medical University of InnsbruckInnsbruck, Austria
Pinned Repositories
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
cayman
Cayman is a Jekyll theme for GitHub Pages
cloudgene-apps-docker
Available Docker Apps for the Hadoop Workflow System Cloudgene
cloudgene-boilerplates
a collection of cloudgene boilerplates
cloudgene-docker
Hadoop Workflow System on Docker (http://cloudgene.uibk.ac.at)
cloudgene-yarn-docker
Cloudgene +YARN + Docker
haplogrep-cmd
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
mutserve
mtDNA Variant Caller
nft-vcf
nf-test plugin to provide support for VCF files.
scripts
bash scripts and other stuff I always google
seppinho's Repositories
seppinho/restlet-101
A Restlet Webserver
seppinho/poretools
a toolkit for working with Oxford nanopore data
seppinho/ember-paper-start
A skeleton application for a typical web application written using EmberJS framework with Ember Paper
seppinho/docker-cloudera-quickstart
Docker Cloudera Quick Start Image
seppinho/simplesparkapp
Simple Spark Application
seppinho/jbwa
Java Bindings (JNI) for bwa