refseq
There are 19 repositories under refseq topic.
pirovc/genome_updater
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
oschwengers/referenceseeker
Rapid determination of appropriate reference genomes.
pirovc/ganon
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
muellan/metacache
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
JensUweUlrich/Taxor
Fast and space-efficient taxonomic classification of long reads
fsprojects/BioProviders
F# library for accessing and manipulating bioinformatic datasets.
dfguan/deSPI
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
ClementLancien/convertToEntrezGeneID
Download biological databas, extract database identifier and entrez gene identifier, insert in a mongo database
JacobHanimann/IsoAligner
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
g-insana/ortho2tree
Pipeline for the selection of canonical proteins for reference proteomes
brinkmanlab/MicrobeDB
Curated mirror of RefSeq Microbial Genomes. Available via CVMFS repository.
mr-eyes/orthodb-refseq-mapper
Mapping RefSeq RNA to OrthoDB (Under Development)
mtp-usz/IsoAligner
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
bielasilva/mock_ncbi_download
Randomly download genomes from NCBI RefSeq and Genbank
GENCARDIO/build_gene_transcript_db
Get the latest gene-transcript identifiers using Ensembl, RefSeq, MANE and LRGs models.
hunglin59638/makura
NCBI Genome downloader
akarazeev/LauzHack19
🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics
asadprodhan/Downloading_genomes_from_RefSeq
Downloading Genomes from RefSeq
forestdussault/download_refseq
:arrow_down: Facilitates downloading NCBI's RefSeq with a human-readable file structure