oschwengers/referenceseeker

Issues

• Finding a suitable reference for a set of genomes

  #26 opened 2 years ago by MostafaYA
  3

• Database update

  #28 opened 6 months ago by MostafaYA
  3

• no conda install for Apple Silicon

  #27 opened a year ago by nick-youngblut
  1

• [BUG] I can't make a custom db with referenceseeker_db init

  #25 opened 2 years ago by drelo
  2

• Add a sliding window parameter for the DNA fragment creation

  #24 opened 2 years ago by oschwengers
  0

• ReferenceSeeker and Metagenome-Assembled Genomes

  #23 opened 3 years ago by padbc
  2

• [Question] Using ReferenceSeeker to cluster draft fungal genomes

  #22 opened 3 years ago by Rob-murphys
  10

• Pre-built databases for other RefSeq sections

  #18 opened 3 years ago by Benjamin-Lee
  2

• Seemingly successful ReferenceSeeker run with no results.

  #21 opened 3 years ago by Rob-murphys
  8

• ERROR: database file (db.tsv) not readable! on custom database

  #20 opened 3 years ago by Rob-murphys
  3

• <NA/> is being added to the start of file path

  #19 opened 3 years ago by Rob-murphys
  4

• Reduce DB sizes

  #15 opened 3 years ago by oschwengers
  0

• Provide prebuilt GTDB databases

  #14 opened 3 years ago by oschwengers
  0

• [BUG] IndexError: list index out of range

  #13 opened 3 years ago by Jwebster89
  1

• Debugging output with "base dir" and "share dir"

  #12 opened 4 years ago by standage
  1

• Add internal checks during custom db creation

  #10 opened 4 years ago by oschwengers
  0

• Empty results for a custom built DB

  #9 opened 4 years ago by erelior
  3

• [BUG] Updating database script errors

  #8 opened 4 years ago by samlhao
  2

• Empty matrix

  #3 opened 4 years ago by theo-llewellyn
  5

• Feature request: ability to include private data

  #6 opened 4 years ago by standage
  3

• Continuous integration

  #5 opened 4 years ago by standage
  3

• Test suite or instructions

  #4 opened 4 years ago by standage
  2

• Allow user to set conserved_dna and ani threshold

  #2 opened 5 years ago by natir
  3

• Did you want help to create bioconda package

  #1 opened 5 years ago by natir
  3