Pinned Repositories
Buscogeny
Create a phylogenetic tree from BUSCO identified single copy genes
cervus_filter
Filters cervus results for parentage matches and reports mismatches in target regions
Coin_flip_app
A coin flipping app for use with Magic The Gathering
Core_gene_phylo
Repository for code to create bacterial core gene phylogenies
Directory_structuring
GATC
converts 50k data to input for cervus
genome-downloading
quick script for creating a genome download script for NCBI
NCBI_genome_download
Creates a bash script for downloading all reference genomes of a specified genus
Signal_peptide_prediction
Python script to run 4 signal peptide prediction software and generate a consensus
UBCG_filter
Script to filter UBCG alignments and output alignment containing equal number of isolates
Jwebster89's Repositories
Jwebster89/NCBI_genome_download
Creates a bash script for downloading all reference genomes of a specified genus
Jwebster89/Core_gene_phylo
Repository for code to create bacterial core gene phylogenies
Jwebster89/Buscogeny
Create a phylogenetic tree from BUSCO identified single copy genes
Jwebster89/Directory_structuring
Jwebster89/Signal_peptide_prediction
Python script to run 4 signal peptide prediction software and generate a consensus
Jwebster89/UBCG_filter
Script to filter UBCG alignments and output alignment containing equal number of isolates
Jwebster89/cervus_filter
Filters cervus results for parentage matches and reports mismatches in target regions
Jwebster89/Coin_flip_app
A coin flipping app for use with Magic The Gathering
Jwebster89/GATC
converts 50k data to input for cervus
Jwebster89/genome-downloading
quick script for creating a genome download script for NCBI
Jwebster89/IGS-checker
A python script to annotate repeat regions in an IGS
Jwebster89/Inherited_disease_panel
Scripts to parse data from inherited disease panels
Jwebster89/mage
Multilocus Alignment GEnerator
Jwebster89/minion-assembler
Bash script to automate assembly of bacterial genomes
Jwebster89/ONT-Summary-Seq-demux
A script to automate subsetting a summary_seq.txt file into separate barcode files based on multiplex data
Jwebster89/PIPi
Pestivirus Identification Pipeline
Jwebster89/trycycler_scripts
Scripts for genome assembly with trycycler
Jwebster89/Unicycler
hybrid assembly pipeline for bacterial genomes
Jwebster89/Virsequel
Virsequel is a Python script for identifying viral sequences in RNA-seq data.
Jwebster89/Watermelon_mosaic
Jwebster89/Xanthomonas_blastdb
Database of Xanthomonas genomes for local blast searching