Jwebster89

Jwebster89's Stars

• anuraghazra/github-readme-stats

  :zap: Dynamically generated stats for your github readmes

  Language:JavaScript68.6k2751.2k22.6k

• gamcil/clinker

  Gene cluster comparison figure generator

  Language:Python518149069

• oschwengers/bakta

  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  Language:Python4321323153

• nanoporetech/medaka

  Sequence correction provided by ONT Research

  Language:Python4104649874

• amkozlov/raxml-ng

  RAxML Next Generation: faster, easier-to-use and more flexible

  Language:C++3851918164

• tseemann/abricate

  :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

  Language:Perl3642919989

• broadinstitute/pilon

  Pilon is an automated genome assembly improvement and variant detection tool

  Language:Scala3403017060

• marbl/verkko

  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

  Language:Python2891727529

• gtonkinhill/panaroo

  An updated pipeline for pangenome investigation

  Language:Python2621226633

• smirarab/ASTRAL

  Accurate Species TRee ALgorithm

  Language:Java234207268

• sanger-pathogens/ariba

  Antimicrobial Resistance Identification By Assembly

  Language:Python1672212253

• rrwick/Polypolish

  a short-read polishing tool for long-read assemblies

  Language:Rust14211249

• timflutre/trimmomatic

  Read trimming tool for Illumina NGS data.

  Language:Java127112188

• fwhelan/coinfinder

  A tool for the identification of coincident (associating and dissociating) genes in pangenomes.

  Language:C++927769

• kishwarshafin/helen

  H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

  Language:Python696279

• ythuang0522/homopolish

  High-quality Nanopore-only genome polisher

  Language:Python6563912

• moshi4/COGclassifier

  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

  Language:Python54216

• allind/EukDetect

  Language:Python4344916

• kussell-lab/mcorr

  Inferring bacterial recombination rates from large-scale sequencing datasets.

  Language:Go414228

• jts/assembly_accuracy

  tools for assessing the accuracy of genome assemblies

  Language:Python34434

• terrimporter/CO1Classifier

  This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.

  30654

• MarWoes/wg-blimp

  wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data

  Language:R2722312

• uym2/MinVar-Rooting

  Linear-time rooting of phylogenetic trees

  Language:Python15325

• guillemylla/Crickets_Genome_Annotation

  Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.

  Language:HTML13213

• MaestSi/ONTrack

  A MinION-based pipeline for tracking species biodiversity

  Language:R121103

• DerKevinRiehl/transposon_annotation_tools

  A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easier for people to install and run these softwares.

  Language:Perl113107

• lefeverde/Mr_Demuxy

  A Demultixper for Combinatorially Multiplexed Next Generation Reads

  Language:Python81

• bogemad/trycycler_scripts

  Scripts for genome assembly with trycycler

  Language:Shell4101

• dwheelerau/DPI-coding-resources

  Shared coding resources used at NSW DPI

  4100

• bogemad/cervus_parse

  A script for parsing zipped vcf files (from an Ion Torrent run) to a genotype format for Cervus

  Language:Python21