amkozlov/raxml-ng

Issues

• Assertion `tip_index == tip_count' failed

  #202 opened a month ago by domivika
  8

• When I run raxml-ng v1.1, it stay in the stage of Starting ML tree search with 20 distinct starting trees for a longnight

  #156 opened a month ago by Dkaaaaa
  1

• very very large dataset recomendations

  #167 opened a month ago by sapuizait
  2

• ancestral state reconstruction

  #187 opened a month ago by liamxg
  0

• error

  #190 opened a month ago by liamxg
  4

• The amino acid sequence contains U

  #201 opened a month ago by wang748
  1

• constraint tree

  #200 opened a month ago by hjt1129
  12

• Hanging at Parsing MSA

  #199 opened 2 months ago by kevinmyers
  5

• Effect of number of threads on raxml.bestModel

  #197 opened 3 months ago by yozeng
  2

• FASTA file does not contain equal size sequences

  #198 opened 3 months ago by qkqk-hub
  0

• Confused command line

  #194 opened 4 months ago by liamxg
  2

• install error

  #191 opened 3 months ago by liamxg
  4

• how to set the random start tree?

  #163 opened 3 months ago by liamxg
  1

• Bus Error on Apple M1 Ultra Using RAxML-NG v. 1.2.0

  #168 opened 4 months ago by hushuzuiniu
  4

• how to estimate the `#categories:`

  #195 opened 4 months ago by liamxg
  1

• ERROR in SPR round (LIBPLL-3584): Constraint check failed after SPR round!

  #196 opened 4 months ago by jedgold
  2

• Is this normal of this blank line?

  #192 opened 5 months ago by liamxg
  2

• Excluding sites

  #189 opened 5 months ago by fluttercork
  2

• which parameters should I use with the "lot of missing data"?

  #193 opened 5 months ago by liamxg
  1

• how many functions are not find in `raxml-ng -h`?

  #188 opened 5 months ago by liamxg
  2

• +B gets added to model description

  #186 opened 5 months ago by wpfeiffer
  2

• Raxml-ng behavior regarding alignment sites

  #185 opened 6 months ago by aghozlane
  1

• Making tree from large dataset

  #181 opened 7 months ago by kevinmyers
  8

• BL opt converged to a worse likelihood score

  #183 opened 7 months ago by fluttercork
  10

• libc++abi: terminating with uncaught exception of type std::runtime_error: ERROR in SPR round (LIBPLL-3584): Constraint check failed after SPR round!

  #170 opened 7 months ago by rvosa
  8

• Duplications don't cluster after ancestral tree reconstruction

  #184 opened 7 months ago by ceren-yildirim
  5

• Add raxml-ng in apt

  #180 opened 9 months ago by aghozlane
  0

• tbe values when using a constraint tree

  #175 opened 7 months ago by padpadpadpad
  1

• masked missing positions

  #173 opened 7 months ago by TCHeaven
  1

• Substitution rates

  #182 opened 7 months ago by liamxg
  3

• Too many samples on a long branch in a rooted tree containing three outgroup tips

  #179 opened 10 months ago by QianGuoPKU
  1

• why the number is from #2 to #1?

  #178 opened 10 months ago by BEAST-Community
  2

• Binary data input format

  #177 opened a year ago by maggiesudo
  6

• which software and parameters should I use to construct a good ml tree?

  #174 opened a year ago by liamxg
  1

• What is the different between G4 and G4m, thanks.

  #176 opened a year ago by liamxg
  1

• can raxml-ng handle 6 million genomes of SARS-CoV-2?

  #172 opened a year ago by liamxg
  4

• Broken link for Mac M1 binary

  #169 opened a year ago by ChrisHIV
  1

• all branch lengths always `0.000001` with CATG file

  #162 opened a year ago by dlaehnemann
  4

• BalancerStat Assertion failed?

  #166 opened a year ago by danieljrichard
  1

• What libpll code is really needed

  #164 opened a year ago by tillea
  3

• Error: assertion failed

  #161 opened a year ago by greektash
  9

• `ERROR: vector::_M_default_append` when running on CATG file

  #160 opened a year ago by dlaehnemann
  9

• terminate called recursively -- Aborted (core dumped)

  #152 opened 2 years ago by 0xaf1f
  8

• catg files/core dumped

  #159 opened 2 years ago by gerhardJaeger
  10

• run --start execution mode in parallel

  #151 opened 2 years ago by tschuelia
  3

• `raxml-ng --parse` does not produce `.rba` file for a `.catg` file as `--msa` input in version 1.1.0

  #158 opened 2 years ago by dlaehnemann
  4

• Taxon names with invalid characters

  #153 opened 2 years ago by AndreaAguadoM
  2

• Add bootstrap values to phylogenetic tree

  #155 opened 2 years ago by asierFernandezP
  2

• PARTITION FILE format - Error

  #154 opened 2 years ago by vcastroagudin
  1

• How can I reserve all the sequences

  #150 opened 2 years ago by YaoXinZhi
  0