Pinned Repositories
-Crawl-DrugBank-database
DrugBank database
BERT-CRF-for-BioNLP-OST2019-AGAC-Task1
AGAC-BioNL-OST2009-Task1 BERT+CRF
BERT-for-20NewsGroups
《2021医学健康数据分析与挖掘》课程论文 -- 基于BERT的20NewsGroups数据集新闻分类实验
BERT-for-BioNLP-OST2019-AGAC-Task2
BERT-for-BioNLP-OST2019-AGAC-Task2
Bi-LSTM-Attention
研一深度学习课程作业 Bi-LSTM + Attention （nice code）
BioNLP-Toolkit
Commonly used BioNLP toolkit for myself.
CDS-extract
Extract CDS sequences from whole genome based on GTF files
Code-accumulation
Demo code + comment record
Convert-Bert-TF-checkpoint-to-Pytorch
Convert Bert TF-checkpoint to Pytorch
Needleman-Wunsch
This is a complete algorithm, you can get the best matching sequence and score.
YaoXinZhi's Repositories
YaoXinZhi/Convert-Bert-TF-checkpoint-to-Pytorch
Convert Bert TF-checkpoint to Pytorch
YaoXinZhi/BERT-for-20NewsGroups
《2021医学健康数据分析与挖掘》课程论文 -- 基于BERT的20NewsGroups数据集新闻分类实验
YaoXinZhi/Bi-LSTM-Attention
研一深度学习课程作业 Bi-LSTM + Attention （nice code）
YaoXinZhi/BERT-for-BioNLP-OST2019-AGAC-Task2
BERT-for-BioNLP-OST2019-AGAC-Task2
YaoXinZhi/BERT-CRF-for-BioNLP-OST2019-AGAC-Task1
AGAC-BioNL-OST2009-Task1 BERT+CRF
YaoXinZhi/BioNLP-Toolkit
Commonly used BioNLP toolkit for myself.
YaoXinZhi/Cancer-Alterome
Cancer-Alterome is a comprehensive and curated dataset that focuses on the investigation of regulatory events caused by gene alteration in the context of cancer.
YaoXinZhi/Code-accumulation
Demo code + comment record
YaoXinZhi/enrRiceTrait
Rice Trait Enrichment
YaoXinZhi/PheSeq
PheSeq, A Bayesian Deep Learning Model to Enhance and Interpret the Gene Disease Association Studies
YaoXinZhi/PMID-Crawling
根据titile信息 爬取PMID
YaoXinZhi/AD-LitPathoNet
Text-mined knowledgebase for AD pathology mechanism investigation
YaoXinZhi/Biostatistics-course-papers
Biostatistics course papers
YaoXinZhi/BLAH8-LLM-for-Rice-GARE
Bioregulatory Event Extraction using Large Language Models: A Case Study of Rice Literature
YaoXinZhi/cgat-apps
cgat-apps repository
YaoXinZhi/Crawl-Journal-or-Literature-Information
Crawl journal/literature information (ISSN, Impact Factor, H-index, AltMetric et.al.)
YaoXinZhi/DAG-WGAN
This is the repository containing the source code for DAG-WGAN: Causal Structure Learning With Wasserstein Generative Adversarial Networks, which is based on the DAG-GNN framework.
YaoXinZhi/Dynamic-programming-algorithm-and-its-improved-algorithm-in-sequence-matching
Dynamic programming algorithm and its improved algorithm in sequence matching, including X-drop and band-DP
YaoXinZhi/Embedding-experiment-in-BioNLP-course
Embedding experiment in BioNLP course
YaoXinZhi/GDAMDB
YaoXinZhi/Messy-little-code
Messy little code
YaoXinZhi/NCBI_Crawling
NCBI_***info_crawler for friend.
YaoXinZhi/Ontology-Edit
An Ontology-Edit (work in progress)
YaoXinZhi/Plant-Trait-Enrichment
A python package for plant trait enrichment.
YaoXinZhi/PTO
植物表型本体搜索
YaoXinZhi/PURE
Code and models for the paper "A Frustratingly Easy Approach for Entity and Relation Extraction"
YaoXinZhi/Rice-Trait-Ontology
Rice Trait Ontology (RTO)
YaoXinZhi/Skip-Gram-NS-with-pytorch
pytorch implements basic skip-gram algorithm and skip-gram algorithm with negative sampling.
YaoXinZhi/vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
YaoXinZhi/YaoXinZhi
Config files for my GitHub profile.