sanger-pathogens/ariba

Issues

• Error in generating PubMLST database with ariba pubmlstget: Missing gene-specific .tfa files

  #344 opened 14 days ago by jimmlucas
  0

• Resfinder -- interpretation

  #343 opened a month ago by ZainBioBytes
  0

• There is not detailed_serogroup_info

  #342 opened 3 months ago by juanjo255
  0

• Bowtie2 ERROR

  #341 opened 3 months ago by Mx-Chpl
  0

• Biopython 1.78 not compatible because of Alphabet missing

  #307 opened 4 years ago by besnarda
  3

• Incompatible Biopython version in Ariba Docker image

  #317 opened 3 years ago by KuangXY3
  1

• Failed cluster: cluster

  #330 opened 2 years ago by Iqrarshad
  1

• Test run seems to not work properly

  #338 opened a year ago by marcellobeltrami
  2

• Change "pubmlstspecies" source url

  #340 opened a year ago by Nilad
  0

• test data seem to need refresh with bowtie2 2.5.0

  #329 opened a year ago by emollier
  5

• VFDB contains few genes that are not part of any cluster

  #331 opened 2 years ago by PovilasMat
  2

• Using Ariba for single-end reads and fasta files

  #339 opened a year ago by AroobAlhumaidy
  1

• How to determine SNP frequency in multi-copy genes (e.g., 23S rRNA).

  #337 opened a year ago by slvrshot
  2

• mpileup: invalid option -- 't'

  #327 opened a year ago by Mx-Chpl
  7

• mpileup: invalid option -- 't'

  #326 opened a year ago by Mx-Chpl
  2

• Long read compatibility by tweaking the pipeline

  #332 opened 2 years ago by varun8476
  1

• Unable to download Escherichia coli#1 and Escherichia coli#2

  #308 opened 4 years ago by RotimiDada
  2

• Filter Bad MLST Profiles from PubMLST

  #328 opened 2 years ago by Nilad
  0

• problems with resfinder and vfdb

  #325 opened 2 years ago by fedeserral
  2

• A cluster failed !! Any help would be great

  #322 opened 3 years ago by MariaPerezVazquez
  1

• Bug when dealing with insertions and deletions in assemblies

  #324 opened 2 years ago by pirale
  0

• NCBI Database Download Error

  #313 opened 4 years ago by EmmaMills101
  4

• input data

  #323 opened 3 years ago by daoerxianqiao
  0

• Conda package support for Python 3.7+

  #312 opened 4 years ago by zmunro
  4

• Support for downloading cgMLST schemes?

  #311 opened 4 years ago by slvrshot
  1

• NCBI Data Download Error

  #316 opened 3 years ago by hackerzone85
  1

• Failure in getting SPAdes version

  #314 opened 3 years ago by wanyuac
  2

• Try to understand the report column 27 and 29

  #266 opened 6 years ago by pixuenan
  1

• Simple question: Can you use assemblies with ariba?

  #291 opened 4 years ago by slvrshot
  0

• Problem interpreting 'gene' + 'var_only' columns

  #285 opened 5 years ago
  1

• ARIBA error in Galaxy

  #309 opened 4 years ago by ajkarloss
  0

• ariba.clusters.Error: At least one cluster failed

  #306 opened 4 years ago by JFsanchezherrero
  0

• get_ref card is attempting to download RGI

  #301 opened 4 years ago by rpetit3
  5

• PubMLST URL change breaks pubmlstget

  #304 opened 4 years ago by rpetit3
  2

• LooseVersion' object has no attribute 'version

  #300 opened 4 years ago by mabouelk
  5

• Reason for pymummer<=0.10.3 ?

  #267 opened 6 years ago by tseemann
  2

• How to adapt to single-ended data

  #299 opened 4 years ago by feihongloveworld
  0

• README missing SPAdes as a dependency

  #298 opened 5 years ago by kapsakcj
  0

• Reference dataset of megares cannot be downloaded

  #287 opened 5 years ago by sgonzalezbodi
  3

• Megares Downloading Error

  #294 opened 5 years ago by ajkarloss
  4

• Summarising MLST reports?

  #292 opened 5 years ago by wanyuac
  1

• Nanopore and ARIBA compatibility?

  #293 opened 5 years ago by Grandjean-Lapierre-Lab
  0

• Summary ignores one gene

  #290 opened 5 years ago by GonzaloYebra
  0

• CARD 3.0.6 introduces white space in seq id causing fasta/metadata mismatch

  #284 opened 5 years ago by rpetit3
  2

• Are the variant IDs in Summary result comparable When 2 isolates that match to same cluster, but their closest references are different

  #283 opened 5 years ago by KuangXY3
  0

• ARGannot download fails

  #281 opened 5 years ago by gkapatai
  2

• Version 3.0.3 of CARD breaks prepareref

  #278 opened 5 years ago by JezSw
  9

• matplotlib listed twice as a dep in setup.py

  #275 opened 5 years ago by andersgs
  2

• v2.14.1 attributeError: 'Namespace' object has no attribute 'cdhit_max_memory'

  #273 opened 5 years ago by Coldheart79
  5

• Understanding ARIBA report.tsv file

  #268 opened 6 years ago by JFsanchezherrero
  0