hackerzone85
I am a Computational Biologist. Doing work NGS data analysis using various tools.
Siksha 'O' Anusandhan (Deemed to be University)Bhubaneswar, Odisha, India
Pinned Repositories
Add-missing-Residues-to-PDB-files
Add missing residue to pdb files
BasicVariantCalling
biojupies
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
bioscripts
some useful scripts for working with genomics and sequencing data
cats
COI_NCBI_2018
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
container-xcms
Container for xcms + various R scripts
important_scientific_templates
This repository contains a collection of templates for various documents commonly used in scientific research and publication.
mds_analysis
A step-by-step tutorial for analyzing molecular dynamics (MD) simulations using GROMACS.
Microbiome_Analysis_DIAMOND_MEGAN_Pipeline
An automated Snakemake workflow for comprehensive taxonomic and functional analysis of microbiome sequences. The pipeline utilizes DIAMOND for rapid alignment of short reads or contigs or ORFs and MEGAN for subsequent taxonomic and functional interpretation of the alignment results.
hackerzone85's Repositories
hackerzone85/BasicVariantCalling
hackerzone85/bioscripts
some useful scripts for working with genomics and sequencing data
hackerzone85/mds_analysis
A step-by-step tutorial for analyzing molecular dynamics (MD) simulations using GROMACS.
hackerzone85/Add-missing-Residues-to-PDB-files
Add missing residue to pdb files
hackerzone85/biojupies
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
hackerzone85/cats
hackerzone85/COI_NCBI_2018
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
hackerzone85/container-xcms
Container for xcms + various R scripts
hackerzone85/ea-utils
Automatically exported from code.google.com/p/ea-utils
hackerzone85/fastq_analysis_using_R
script to analysis the fastq files using R
hackerzone85/important_scientific_templates
This repository contains a collection of templates for various documents commonly used in scientific research and publication.
hackerzone85/Kpneumoniae_MLST_Database
MLST informatinon of all avilable genomes (Chromosome, Complete, Scaffolds and Contigs) of Klebsiella pnemoniae at NCBI ftp. The mlst of all assemblies is predicted by mlst v2.11 (https://github.com/tseemann/mlst).
hackerzone85/Microbiome_Analysis_DIAMOND_MEGAN_Pipeline
An automated Snakemake workflow for comprehensive taxonomic and functional analysis of microbiome sequences. The pipeline utilizes DIAMOND for rapid alignment of short reads or contigs or ORFs and MEGAN for subsequent taxonomic and functional interpretation of the alignment results.
hackerzone85/gridmat-md
GridMAT-MD membrane analysis program
hackerzone85/IndexError-cannot-do-a-non-empty-take-from-an-empty-axes-in-metaMIC
hackerzone85/local_bldb
A Collection Of Useful BASH Scripts.
hackerzone85/MelBioInf_docs
Melbourne Bioinformatics documentation in markdown format
hackerzone85/metabolomics2018
Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
hackerzone85/metabolomics_pipeline
Pipeline to process UPLC-MS/MS data with XCMS
hackerzone85/path_converter
This script converts Windows paths to Linux paths and vice versa for users working on WSL (Windows Subsystem for Linux).
hackerzone85/R-Function
R Script to Test, Install and load required packages
hackerzone85/R_Basics
hackerzone85/rdkit-tutorials
Tutorials to learn how to work with the RDKit
hackerzone85/SARTools
Statistical Analysis of RNA-Seq Tools
hackerzone85/Statistical_Learning_Basics
hackerzone85/youtube-dl
Command-line program to download videos from YouTube.com and other video sites